miRNA display CGI


Results 21 - 40 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5577 3' -61.5 NC_001806.1 + 130883 0.72 0.324996
Target:  5'- aCGUGCUgGACCuACUGa-CCCCCCACu -3'
miRNA:   3'- cGCGCGAgUUGG-UGGCgaGGGGGGUG- -5'
5577 3' -61.5 NC_001806.1 + 135594 0.72 0.339476
Target:  5'- cGCGCGCU--GCUGgCGCUCcagggCCCCCGCu -3'
miRNA:   3'- -CGCGCGAguUGGUgGCGAG-----GGGGGUG- -5'
5577 3' -61.5 NC_001806.1 + 2280 0.72 0.34689
Target:  5'- cCGCGCUCGgcggACCACUccgGCggcCCCCCCGa -3'
miRNA:   3'- cGCGCGAGU----UGGUGG---CGa--GGGGGGUg -5'
5577 3' -61.5 NC_001806.1 + 30472 0.72 0.354419
Target:  5'- -gGCGC-C-GCC-CCGCUCCCCuCCGCc -3'
miRNA:   3'- cgCGCGaGuUGGuGGCGAGGGG-GGUG- -5'
5577 3' -61.5 NC_001806.1 + 26647 0.71 0.362063
Target:  5'- -gGCGC-CAgaggcccggcccACCGCCGCcgCCCCCCGg -3'
miRNA:   3'- cgCGCGaGU------------UGGUGGCGa-GGGGGGUg -5'
5577 3' -61.5 NC_001806.1 + 75904 0.71 0.364378
Target:  5'- uUGCGUUUAACCcauacacccccgagaACCagcgccaccccauGCUCCCCCCGCu -3'
miRNA:   3'- cGCGCGAGUUGG---------------UGG-------------CGAGGGGGGUG- -5'
5577 3' -61.5 NC_001806.1 + 59911 0.71 0.36982
Target:  5'- aCGC-CUCu-CCACCGcCUUCCCCCAUc -3'
miRNA:   3'- cGCGcGAGuuGGUGGC-GAGGGGGGUG- -5'
5577 3' -61.5 NC_001806.1 + 49791 0.71 0.36982
Target:  5'- cGCGCGUgggggUCAugCACuuCGcCUCCCCCgACa -3'
miRNA:   3'- -CGCGCG-----AGUugGUG--GC-GAGGGGGgUG- -5'
5577 3' -61.5 NC_001806.1 + 67346 0.71 0.38487
Target:  5'- gGCGCGgggAGCCgaucaggGCCGC-CCCCCCGCg -3'
miRNA:   3'- -CGCGCgagUUGG-------UGGCGaGGGGGGUG- -5'
5577 3' -61.5 NC_001806.1 + 143557 0.71 0.385673
Target:  5'- cCG-GCcCGGCCACCGCcgCCCaCCCACc -3'
miRNA:   3'- cGCgCGaGUUGGUGGCGa-GGG-GGGUG- -5'
5577 3' -61.5 NC_001806.1 + 143649 0.71 0.393766
Target:  5'- gGCGCGC-CGccccCCGCCGCUaaaCCCCAUc -3'
miRNA:   3'- -CGCGCGaGUu---GGUGGCGAgg-GGGGUG- -5'
5577 3' -61.5 NC_001806.1 + 120796 0.71 0.397034
Target:  5'- cCGCGCcgUUGGCCcCCGCcucugggguuugcccUCCCCCCGCc -3'
miRNA:   3'- cGCGCG--AGUUGGuGGCG---------------AGGGGGGUG- -5'
5577 3' -61.5 NC_001806.1 + 29782 0.71 0.401968
Target:  5'- cCGCGCccccccacgCAgaggcGCCGCCGCgCCCCCCGu -3'
miRNA:   3'- cGCGCGa--------GU-----UGGUGGCGaGGGGGGUg -5'
5577 3' -61.5 NC_001806.1 + 52369 0.7 0.410278
Target:  5'- -aGCGUUUcugucgGACCACCGC-CCCCCUg- -3'
miRNA:   3'- cgCGCGAG------UUGGUGGCGaGGGGGGug -5'
5577 3' -61.5 NC_001806.1 + 23459 0.7 0.410278
Target:  5'- cGCgGCGCcCcgGGCCGCCGCggcgcaggCCCgCCCGCg -3'
miRNA:   3'- -CG-CGCGaG--UUGGUGGCGa-------GGG-GGGUG- -5'
5577 3' -61.5 NC_001806.1 + 67122 0.7 0.418694
Target:  5'- cGCGCGCgugCAcCCGCUcucgGCUCgCCCCGa -3'
miRNA:   3'- -CGCGCGa--GUuGGUGG----CGAGgGGGGUg -5'
5577 3' -61.5 NC_001806.1 + 103167 0.7 0.418694
Target:  5'- uGUGCGCUgggccuguaggaCGACCACCuGCUCCgCCgCCGu -3'
miRNA:   3'- -CGCGCGA------------GUUGGUGG-CGAGG-GG-GGUg -5'
5577 3' -61.5 NC_001806.1 + 30153 0.7 0.427214
Target:  5'- gGCGCccaugccagGCUCcGCCccCCGCcccgggCCCCCCGCg -3'
miRNA:   3'- -CGCG---------CGAGuUGGu-GGCGa-----GGGGGGUG- -5'
5577 3' -61.5 NC_001806.1 + 43462 0.7 0.427214
Target:  5'- gGCGCGC-CA-CCACCccggGUUCgaggCCCCCACg -3'
miRNA:   3'- -CGCGCGaGUuGGUGG----CGAG----GGGGGUG- -5'
5577 3' -61.5 NC_001806.1 + 123882 0.7 0.427214
Target:  5'- aGC-CGCUCGucucAUCGCCGCgcgUCCCCCGa -3'
miRNA:   3'- -CGcGCGAGU----UGGUGGCGa--GGGGGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.