miRNA display CGI


Results 21 - 40 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5577 3' -61.5 NC_001806.1 + 19745 0.66 0.673763
Target:  5'- cCGCGUccccccuccUCcGCCcCCGCgUCCCCCCu- -3'
miRNA:   3'- cGCGCG---------AGuUGGuGGCG-AGGGGGGug -5'
5577 3' -61.5 NC_001806.1 + 19789 0.66 0.673763
Target:  5'- cCGCGUccccccuccUCcGCCcCCGCgUCCCCCCu- -3'
miRNA:   3'- cGCGCG---------AGuUGGuGGCG-AGGGGGGug -5'
5577 3' -61.5 NC_001806.1 + 20071 0.74 0.265564
Target:  5'- cGCGUGCUCcGCaGCCGCUCCCgUCGu -3'
miRNA:   3'- -CGCGCGAGuUGgUGGCGAGGGgGGUg -5'
5577 3' -61.5 NC_001806.1 + 20631 0.67 0.604727
Target:  5'- cGgGgGUUCGACCaacggGCCGCggccacgggCCCCCgGCg -3'
miRNA:   3'- -CgCgCGAGUUGG-----UGGCGa--------GGGGGgUG- -5'
5577 3' -61.5 NC_001806.1 + 21012 0.66 0.683559
Target:  5'- cGUGgGuCUC-GCC-CC-CUCCCCCCAUc -3'
miRNA:   3'- -CGCgC-GAGuUGGuGGcGAGGGGGGUG- -5'
5577 3' -61.5 NC_001806.1 + 22694 0.67 0.594886
Target:  5'- gGCG-GCUgu-CCGCCGCgcccgccUCCCCCGCg -3'
miRNA:   3'- -CGCgCGAguuGGUGGCGa------GGGGGGUG- -5'
5577 3' -61.5 NC_001806.1 + 23245 0.75 0.220407
Target:  5'- aCGCGCUggCGGCCGCCGCcgCCuCCgCCGCg -3'
miRNA:   3'- cGCGCGA--GUUGGUGGCGa-GG-GG-GGUG- -5'
5577 3' -61.5 NC_001806.1 + 23459 0.7 0.410278
Target:  5'- cGCgGCGCcCcgGGCCGCCGCggcgcaggCCCgCCCGCg -3'
miRNA:   3'- -CG-CGCGaG--UUGGUGGCGa-------GGG-GGGUG- -5'
5577 3' -61.5 NC_001806.1 + 23582 0.73 0.311669
Target:  5'- gGCgGCGCccgCGGCCGCCGCccuggaggccuacugCUCCCCGCg -3'
miRNA:   3'- -CG-CGCGa--GUUGGUGGCGa--------------GGGGGGUG- -5'
5577 3' -61.5 NC_001806.1 + 23625 0.66 0.673763
Target:  5'- cGCGCcguggccgaGCUCAcggACCAcCCGCuguuccccgUCCCCUgGCg -3'
miRNA:   3'- -CGCG---------CGAGU---UGGU-GGCG---------AGGGGGgUG- -5'
5577 3' -61.5 NC_001806.1 + 23722 0.66 0.654084
Target:  5'- gGUGCGC-CGGgC-CCGC-CCCCgCCGCc -3'
miRNA:   3'- -CGCGCGaGUUgGuGGCGaGGGG-GGUG- -5'
5577 3' -61.5 NC_001806.1 + 24907 0.66 0.644216
Target:  5'- gGCGgGCUUGGCCA-CGC-CCCCgCgGCg -3'
miRNA:   3'- -CGCgCGAGUUGGUgGCGaGGGG-GgUG- -5'
5577 3' -61.5 NC_001806.1 + 26384 0.67 0.575285
Target:  5'- cGC-CGCcgCcGCCAUCGCggCCCCCGCc -3'
miRNA:   3'- -CGcGCGa-GuUGGUGGCGagGGGGGUG- -5'
5577 3' -61.5 NC_001806.1 + 26498 0.81 0.09269
Target:  5'- aGCGCGCccgCGGCCgccccGCCGCcgCCCCCCGCc -3'
miRNA:   3'- -CGCGCGa--GUUGG-----UGGCGa-GGGGGGUG- -5'
5577 3' -61.5 NC_001806.1 + 26647 0.71 0.362063
Target:  5'- -gGCGC-CAgaggcccggcccACCGCCGCcgCCCCCCGg -3'
miRNA:   3'- cgCGCGaGU------------UGGUGGCGa-GGGGGGUg -5'
5577 3' -61.5 NC_001806.1 + 26745 0.66 0.633352
Target:  5'- cGCGCcccuuccGC-CuuCCGCCGCgccucgCCCUCCGCc -3'
miRNA:   3'- -CGCG-------CGaGuuGGUGGCGa-----GGGGGGUG- -5'
5577 3' -61.5 NC_001806.1 + 26856 0.68 0.565538
Target:  5'- cCGCGacccccgCGACCcCCGCgaCCCCCGCg -3'
miRNA:   3'- cGCGCga-----GUUGGuGGCGagGGGGGUG- -5'
5577 3' -61.5 NC_001806.1 + 26901 0.67 0.594886
Target:  5'- cCGCGCggGugCGCUuCUCgCCCCACg -3'
miRNA:   3'- cGCGCGagUugGUGGcGAGgGGGGUG- -5'
5577 3' -61.5 NC_001806.1 + 29782 0.71 0.401968
Target:  5'- cCGCGCccccccacgCAgaggcGCCGCCGCgCCCCCCGu -3'
miRNA:   3'- cGCGCGa--------GU-----UGGUGGCGaGGGGGGUg -5'
5577 3' -61.5 NC_001806.1 + 30153 0.7 0.427214
Target:  5'- gGCGCccaugccagGCUCcGCCccCCGCcccgggCCCCCCGCg -3'
miRNA:   3'- -CGCG---------CGAGuUGGu-GGCGa-----GGGGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.