miRNA display CGI


Results 1 - 20 of 160 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5577 3' -61.5 NC_001806.1 + 71 0.73 0.284338
Target:  5'- -gGCGUcUGGCCGCUcCUCCCCCCGCu -3'
miRNA:   3'- cgCGCGaGUUGGUGGcGAGGGGGGUG- -5'
5577 3' -61.5 NC_001806.1 + 104 0.67 0.575285
Target:  5'- --cCGCUCcuccccCCGCUcCUCCCCCCGCu -3'
miRNA:   3'- cgcGCGAGuu----GGUGGcGAGGGGGGUG- -5'
5577 3' -61.5 NC_001806.1 + 140 0.67 0.575285
Target:  5'- --cCGCUCcuccccCCGCUcCUCCCCCCGCu -3'
miRNA:   3'- cgcGCGAGuu----GGUGGcGAGGGGGGUG- -5'
5577 3' -61.5 NC_001806.1 + 176 0.67 0.575285
Target:  5'- --cCGCUCcuccccCCGCUcCUCCCCCCGCu -3'
miRNA:   3'- cgcGCGAGuu----GGUGGcGAGGGGGGUG- -5'
5577 3' -61.5 NC_001806.1 + 212 0.67 0.575285
Target:  5'- --cCGCUCcuccccCCGCUcCUCCCCCCGCu -3'
miRNA:   3'- cgcGCGAGuu----GGUGGcGAGGGGGGUG- -5'
5577 3' -61.5 NC_001806.1 + 248 0.67 0.575285
Target:  5'- --cCGCUCcuccccCCGCUcCUCCCCCCGCu -3'
miRNA:   3'- cgcGCGAGuu----GGUGGcGAGGGGGGUG- -5'
5577 3' -61.5 NC_001806.1 + 296 0.67 0.614588
Target:  5'- --cCGCUC--CCGCgGCcccgCCCCCCACg -3'
miRNA:   3'- cgcGCGAGuuGGUGgCGa---GGGGGGUG- -5'
5577 3' -61.5 NC_001806.1 + 327 0.66 0.63434
Target:  5'- cGCGCGCgc-GCaCGCCGCccggaccgCCgCCCGCc -3'
miRNA:   3'- -CGCGCGaguUG-GUGGCGa-------GGgGGGUG- -5'
5577 3' -61.5 NC_001806.1 + 565 0.68 0.555834
Target:  5'- -gGCGC--AACaCACCGCUCCUgCUACa -3'
miRNA:   3'- cgCGCGagUUG-GUGGCGAGGGgGGUG- -5'
5577 3' -61.5 NC_001806.1 + 826 0.68 0.527039
Target:  5'- cCGCGCaCcACCACCGCcccucgcccCCUCCCGCc -3'
miRNA:   3'- cGCGCGaGuUGGUGGCGa--------GGGGGGUG- -5'
5577 3' -61.5 NC_001806.1 + 2280 0.72 0.34689
Target:  5'- cCGCGCUCGgcggACCACUccgGCggcCCCCCCGa -3'
miRNA:   3'- cGCGCGAGU----UGGUGG---CGa--GGGGGGUg -5'
5577 3' -61.5 NC_001806.1 + 3172 0.67 0.594886
Target:  5'- gGCGCGCacggCGGCCACgGCggCCUCgCUGCc -3'
miRNA:   3'- -CGCGCGa---GUUGGUGgCGa-GGGG-GGUG- -5'
5577 3' -61.5 NC_001806.1 + 3786 0.67 0.624461
Target:  5'- gGCG-GCUCAugGCCACgGCggCCgCCGCg -3'
miRNA:   3'- -CGCgCGAGU--UGGUGgCGagGGgGGUG- -5'
5577 3' -61.5 NC_001806.1 + 4108 0.69 0.508154
Target:  5'- cGCGC-CUCcuCCGCCucggGCgCCCCCCAg -3'
miRNA:   3'- -CGCGcGAGuuGGUGG----CGaGGGGGGUg -5'
5577 3' -61.5 NC_001806.1 + 4197 0.67 0.585069
Target:  5'- -gGCGCcgGGCCACgGCUCCCCgCUgACg -3'
miRNA:   3'- cgCGCGagUUGGUGgCGAGGGG-GG-UG- -5'
5577 3' -61.5 NC_001806.1 + 5044 0.66 0.693316
Target:  5'- cCGCGCc---CCACC-CgagggCCCCCCGCu -3'
miRNA:   3'- cGCGCGaguuGGUGGcGa----GGGGGGUG- -5'
5577 3' -61.5 NC_001806.1 + 5507 0.69 0.462288
Target:  5'- -aGCaGCggaGGCCGCCGg-CCCCCCGCc -3'
miRNA:   3'- cgCG-CGag-UUGGUGGCgaGGGGGGUG- -5'
5577 3' -61.5 NC_001806.1 + 5827 0.7 0.453376
Target:  5'- cGCGCGCccgUUGGCCGuccCCGggCCCCCCGg -3'
miRNA:   3'- -CGCGCG---AGUUGGU---GGCgaGGGGGGUg -5'
5577 3' -61.5 NC_001806.1 + 5907 0.67 0.624461
Target:  5'- gGC-CGC-CcGCCuuGCCGC-CCCCCCAUu -3'
miRNA:   3'- -CGcGCGaGuUGG--UGGCGaGGGGGGUG- -5'
5577 3' -61.5 NC_001806.1 + 10650 0.7 0.435836
Target:  5'- cGCGCGCUCcuGCCAcacgaaguCCGUUCguagaCCCCCGg -3'
miRNA:   3'- -CGCGCGAGu-UGGU--------GGCGAG-----GGGGGUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.