miRNA display CGI


Results 1 - 20 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5577 3' -61.5 NC_001806.1 + 152037 0.66 0.63434
Target:  5'- cGCGCGCgc-GCaCGCCGCccggaccgCCgCCCGCc -3'
miRNA:   3'- -CGCGCGaguUG-GUGGCGa-------GGgGGGUG- -5'
5577 3' -61.5 NC_001806.1 + 152006 0.67 0.614588
Target:  5'- --cCGCUC--CCGCgGCcccgCCCCCCACg -3'
miRNA:   3'- cgcGCGAGuuGGUGgCGa---GGGGGGUG- -5'
5577 3' -61.5 NC_001806.1 + 151958 0.67 0.575285
Target:  5'- --cCGCUCcuccccCCGCUcCUCCCCCCGCu -3'
miRNA:   3'- cgcGCGAGuu----GGUGGcGAGGGGGGUG- -5'
5577 3' -61.5 NC_001806.1 + 151922 0.67 0.575285
Target:  5'- --cCGCUCcuccccCCGCUcCUCCCCCCGCu -3'
miRNA:   3'- cgcGCGAGuu----GGUGGcGAGGGGGGUG- -5'
5577 3' -61.5 NC_001806.1 + 151886 0.67 0.575285
Target:  5'- --cCGCUCcuccccCCGCUcCUCCCCCCGCu -3'
miRNA:   3'- cgcGCGAGuu----GGUGGcGAGGGGGGUG- -5'
5577 3' -61.5 NC_001806.1 + 151850 0.67 0.575285
Target:  5'- --cCGCUCcuccccCCGCUcCUCCCCCCGCu -3'
miRNA:   3'- cgcGCGAGuu----GGUGGcGAGGGGGGUG- -5'
5577 3' -61.5 NC_001806.1 + 151814 0.67 0.575285
Target:  5'- --cCGCUCcuccccCCGCUcCUCCCCCCGCu -3'
miRNA:   3'- cgcGCGAGuu----GGUGGcGAGGGGGGUG- -5'
5577 3' -61.5 NC_001806.1 + 151781 0.73 0.284338
Target:  5'- -gGCGUcUGGCCGCUcCUCCCCCCGCu -3'
miRNA:   3'- cgCGCGaGUUGGUGGcGAGGGGGGUG- -5'
5577 3' -61.5 NC_001806.1 + 150679 0.68 0.565538
Target:  5'- cCGCGCUggCGGCCGCCGauggCCaguCCCGCc -3'
miRNA:   3'- cGCGCGA--GUUGGUGGCga--GGg--GGGUG- -5'
5577 3' -61.5 NC_001806.1 + 148928 0.66 0.673763
Target:  5'- -gGUGgUCGGcgucCCcCCGC-CCCCCCACu -3'
miRNA:   3'- cgCGCgAGUU----GGuGGCGaGGGGGGUG- -5'
5577 3' -61.5 NC_001806.1 + 148816 0.66 0.663936
Target:  5'- gGgGgGCUCccCCccgagACCGC-CCCCCCAUc -3'
miRNA:   3'- -CgCgCGAGuuGG-----UGGCGaGGGGGGUG- -5'
5577 3' -61.5 NC_001806.1 + 148737 0.66 0.63434
Target:  5'- -gGCGCaCAcgucGCCcucgUCGCUCCCCCCGu -3'
miRNA:   3'- cgCGCGaGU----UGGu---GGCGAGGGGGGUg -5'
5577 3' -61.5 NC_001806.1 + 147648 0.68 0.527039
Target:  5'- gGCGCGCgUCcgcggggcgGGCgGCCgGCUCCgCCCCGg -3'
miRNA:   3'- -CGCGCG-AG---------UUGgUGG-CGAGG-GGGGUg -5'
5577 3' -61.5 NC_001806.1 + 145427 0.67 0.614588
Target:  5'- -gGgGgUCGGCCGgugUCGCUguaaCCCCCCACg -3'
miRNA:   3'- cgCgCgAGUUGGU---GGCGA----GGGGGGUG- -5'
5577 3' -61.5 NC_001806.1 + 144577 0.69 0.498819
Target:  5'- gGCGCGUcCGgguGCCGCgGCUcuccgggcCCCCCUGCa -3'
miRNA:   3'- -CGCGCGaGU---UGGUGgCGA--------GGGGGGUG- -5'
5577 3' -61.5 NC_001806.1 + 144186 0.7 0.453376
Target:  5'- gGCGgcCGCcgCAGCCGCCGCagCCgCCGCc -3'
miRNA:   3'- -CGC--GCGa-GUUGGUGGCGagGGgGGUG- -5'
5577 3' -61.5 NC_001806.1 + 143649 0.71 0.393766
Target:  5'- gGCGCGC-CGccccCCGCCGCUaaaCCCCAUc -3'
miRNA:   3'- -CGCGCGaGUu---GGUGGCGAgg-GGGGUG- -5'
5577 3' -61.5 NC_001806.1 + 143557 0.71 0.385673
Target:  5'- cCG-GCcCGGCCACCGCcgCCCaCCCACc -3'
miRNA:   3'- cGCgCGaGUUGGUGGCGa-GGG-GGGUG- -5'
5577 3' -61.5 NC_001806.1 + 143440 0.67 0.575285
Target:  5'- cCGCGCUCccACCccccggGCCGUguccuugcuuUCCCCCCGu -3'
miRNA:   3'- cGCGCGAGu-UGG------UGGCG----------AGGGGGGUg -5'
5577 3' -61.5 NC_001806.1 + 141430 0.73 0.310979
Target:  5'- gGCGCGCggcCAACCGgCGgauaaCUCCgCCCACg -3'
miRNA:   3'- -CGCGCGa--GUUGGUgGC-----GAGGgGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.