miRNA display CGI


Results 1 - 20 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5577 3' -61.5 NC_001806.1 + 129839 0.66 0.693316
Target:  5'- cGCGUGCUguugcuUCACuCGCUCaCCCCCc- -3'
miRNA:   3'- -CGCGCGAguu---GGUG-GCGAG-GGGGGug -5'
5577 3' -61.5 NC_001806.1 + 126770 0.73 0.284338
Target:  5'- aCGUGCUCGacaGCCACUuccccgacuGCcCCCCCCACc -3'
miRNA:   3'- cGCGCGAGU---UGGUGG---------CGaGGGGGGUG- -5'
5577 3' -61.5 NC_001806.1 + 151781 0.73 0.284338
Target:  5'- -gGCGUcUGGCCGCUcCUCCCCCCGCu -3'
miRNA:   3'- cgCGCGaGUUGGUGGcGAGGGGGGUG- -5'
5577 3' -61.5 NC_001806.1 + 78611 0.73 0.297427
Target:  5'- cCGUGC-CGGCCGCCGCcacccaccgCaCCCCCGCg -3'
miRNA:   3'- cGCGCGaGUUGGUGGCGa--------G-GGGGGUG- -5'
5577 3' -61.5 NC_001806.1 + 72785 0.73 0.304145
Target:  5'- cCGCGaUCccACCACCGcCUCCCUCCGCc -3'
miRNA:   3'- cGCGCgAGu-UGGUGGC-GAGGGGGGUG- -5'
5577 3' -61.5 NC_001806.1 + 96886 0.73 0.310979
Target:  5'- gGUGUgGUUCGGCCACCGCUaCUCCCAg -3'
miRNA:   3'- -CGCG-CGAGUUGGUGGCGAgGGGGGUg -5'
5577 3' -61.5 NC_001806.1 + 78910 0.73 0.310979
Target:  5'- cCGCGCUC-AUCGCCGagcggCCCCUCGCc -3'
miRNA:   3'- cGCGCGAGuUGGUGGCga---GGGGGGUG- -5'
5577 3' -61.5 NC_001806.1 + 141430 0.73 0.310979
Target:  5'- gGCGCGCggcCAACCGgCGgauaaCUCCgCCCACg -3'
miRNA:   3'- -CGCGCGa--GUUGGUgGC-----GAGGgGGGUG- -5'
5577 3' -61.5 NC_001806.1 + 23582 0.73 0.311669
Target:  5'- gGCgGCGCccgCGGCCGCCGCccuggaggccuacugCUCCCCGCg -3'
miRNA:   3'- -CG-CGCGa--GUUGGUGGCGa--------------GGGGGGUG- -5'
5577 3' -61.5 NC_001806.1 + 71 0.73 0.284338
Target:  5'- -gGCGUcUGGCCGCUcCUCCCCCCGCu -3'
miRNA:   3'- cgCGCGaGUUGGUGGcGAGGGGGGUG- -5'
5577 3' -61.5 NC_001806.1 + 20071 0.74 0.265564
Target:  5'- cGCGUGCUCcGCaGCCGCUCCCgUCGu -3'
miRNA:   3'- -CGCGCGAGuUGgUGGCGAGGGgGGUg -5'
5577 3' -61.5 NC_001806.1 + 132190 0.74 0.236522
Target:  5'- gGCGCGCcuggCGGCCAuUCGCgacaCCCCCCAg -3'
miRNA:   3'- -CGCGCGa---GUUGGU-GGCGa---GGGGGGUg -5'
5577 3' -61.5 NC_001806.1 + 47181 0.85 0.047238
Target:  5'- -gGCGCUUcGCCACCGC-CCCCCCGCc -3'
miRNA:   3'- cgCGCGAGuUGGUGGCGaGGGGGGUG- -5'
5577 3' -61.5 NC_001806.1 + 26498 0.81 0.09269
Target:  5'- aGCGCGCccgCGGCCgccccGCCGCcgCCCCCCGCc -3'
miRNA:   3'- -CGCGCGa--GUUGG-----UGGCGa-GGGGGGUG- -5'
5577 3' -61.5 NC_001806.1 + 87309 0.79 0.1165
Target:  5'- cGCGCGCccucCGGCUcCCGCUCgCCCCCGCc -3'
miRNA:   3'- -CGCGCGa---GUUGGuGGCGAG-GGGGGUG- -5'
5577 3' -61.5 NC_001806.1 + 78548 0.78 0.138844
Target:  5'- gGCGCGaggcgUCAcCCcCCGCUCCCCCCAa -3'
miRNA:   3'- -CGCGCg----AGUuGGuGGCGAGGGGGGUg -5'
5577 3' -61.5 NC_001806.1 + 69105 0.77 0.165058
Target:  5'- cCGCGCUCGGCCugUGCg-CCCCCGg -3'
miRNA:   3'- cGCGCGAGUUGGugGCGagGGGGGUg -5'
5577 3' -61.5 NC_001806.1 + 100764 0.76 0.177168
Target:  5'- aGCGCgaGCUCGGCCucggcggccagucGCCGCgCCCCUCGCg -3'
miRNA:   3'- -CGCG--CGAGUUGG-------------UGGCGaGGGGGGUG- -5'
5577 3' -61.5 NC_001806.1 + 100653 0.76 0.195633
Target:  5'- cGC-CGCUCGGCCACCagGCUCCagcggUCCCGCa -3'
miRNA:   3'- -CGcGCGAGUUGGUGG--CGAGG-----GGGGUG- -5'
5577 3' -61.5 NC_001806.1 + 23245 0.75 0.220407
Target:  5'- aCGCGCUggCGGCCGCCGCcgCCuCCgCCGCg -3'
miRNA:   3'- cGCGCGA--GUUGGUGGCGa-GG-GG-GGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.