miRNA display CGI


Results 1 - 20 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5577 3' -61.5 NC_001806.1 + 152037 0.66 0.63434
Target:  5'- cGCGCGCgc-GCaCGCCGCccggaccgCCgCCCGCc -3'
miRNA:   3'- -CGCGCGaguUG-GUGGCGa-------GGgGGGUG- -5'
5577 3' -61.5 NC_001806.1 + 148816 0.66 0.663936
Target:  5'- gGgGgGCUCccCCccgagACCGC-CCCCCCAUc -3'
miRNA:   3'- -CgCgCGAGuuGG-----UGGCGaGGGGGGUG- -5'
5577 3' -61.5 NC_001806.1 + 45073 0.66 0.672782
Target:  5'- cGCGCGCcuguugaccagguUCAGuuGCaCGaCUCcgCCCCCGCg -3'
miRNA:   3'- -CGCGCG-------------AGUUggUG-GC-GAG--GGGGGUG- -5'
5577 3' -61.5 NC_001806.1 + 82993 0.66 0.652112
Target:  5'- cGCGUGCgccccucccgccCAGCCAUgGCaacuucgCCCCCCGg -3'
miRNA:   3'- -CGCGCGa-----------GUUGGUGgCGa------GGGGGGUg -5'
5577 3' -61.5 NC_001806.1 + 51819 0.66 0.663936
Target:  5'- cGUG-GC-CGGCCugCGCgacgCCCUCCAUc -3'
miRNA:   3'- -CGCgCGaGUUGGugGCGa---GGGGGGUG- -5'
5577 3' -61.5 NC_001806.1 + 327 0.66 0.63434
Target:  5'- cGCGCGCgc-GCaCGCCGCccggaccgCCgCCCGCc -3'
miRNA:   3'- -CGCGCGaguUG-GUGGCGa-------GGgGGGUG- -5'
5577 3' -61.5 NC_001806.1 + 129839 0.66 0.693316
Target:  5'- cGCGUGCUguugcuUCACuCGCUCaCCCCCc- -3'
miRNA:   3'- -CGCGCGAguu---GGUG-GCGAG-GGGGGug -5'
5577 3' -61.5 NC_001806.1 + 23722 0.66 0.654084
Target:  5'- gGUGCGC-CGGgC-CCGC-CCCCgCCGCc -3'
miRNA:   3'- -CGCGCGaGUUgGuGGCGaGGGG-GGUG- -5'
5577 3' -61.5 NC_001806.1 + 97494 0.66 0.663936
Target:  5'- uGCuGCGCUCcgaguACgGCgGCUCCUUCCGa -3'
miRNA:   3'- -CG-CGCGAGu----UGgUGgCGAGGGGGGUg -5'
5577 3' -61.5 NC_001806.1 + 24907 0.66 0.644216
Target:  5'- gGCGgGCUUGGCCA-CGC-CCCCgCgGCg -3'
miRNA:   3'- -CGCgCGAGUUGGUgGCGaGGGG-GgUG- -5'
5577 3' -61.5 NC_001806.1 + 52645 0.66 0.654084
Target:  5'- gGCGCGacaaCGAgcccCCGCCcCUCCCCCgACc -3'
miRNA:   3'- -CGCGCga--GUU----GGUGGcGAGGGGGgUG- -5'
5577 3' -61.5 NC_001806.1 + 108779 0.66 0.663936
Target:  5'- aGCGUGCugUCGGCCugcacgUCGCUUCCCaCCGg -3'
miRNA:   3'- -CGCGCG--AGUUGGu-----GGCGAGGGG-GGUg -5'
5577 3' -61.5 NC_001806.1 + 52756 0.66 0.644216
Target:  5'- aUGCGaaCGACCcggucGCCGagCCCCCCGCu -3'
miRNA:   3'- cGCGCgaGUUGG-----UGGCgaGGGGGGUG- -5'
5577 3' -61.5 NC_001806.1 + 37671 0.66 0.648165
Target:  5'- uGUGCGCUgCGGCCAaaGCUCUcgcugaugcggucgaCCgCCGCg -3'
miRNA:   3'- -CGCGCGA-GUUGGUggCGAGG---------------GG-GGUG- -5'
5577 3' -61.5 NC_001806.1 + 148737 0.66 0.63434
Target:  5'- -gGCGCaCAcgucGCCcucgUCGCUCCCCCCGu -3'
miRNA:   3'- cgCGCGaGU----UGGu---GGCGAGGGGGGUg -5'
5577 3' -61.5 NC_001806.1 + 77567 0.66 0.63434
Target:  5'- aGUaCGCUgGAUCgGCCGUUCgCCCCCAg -3'
miRNA:   3'- -CGcGCGAgUUGG-UGGCGAG-GGGGGUg -5'
5577 3' -61.5 NC_001806.1 + 131694 0.66 0.641254
Target:  5'- -aGCGC-CAuuACCcuuuacgcgguaugGCUGC-CCCCCCGCg -3'
miRNA:   3'- cgCGCGaGU--UGG--------------UGGCGaGGGGGGUG- -5'
5577 3' -61.5 NC_001806.1 + 132067 0.66 0.63434
Target:  5'- aGCGuCGUggGGCCcgcCCGCcgCCCCUCGCg -3'
miRNA:   3'- -CGC-GCGagUUGGu--GGCGa-GGGGGGUG- -5'
5577 3' -61.5 NC_001806.1 + 125720 0.66 0.663936
Target:  5'- cCGCGCcccUCuGGCCAUCGgUCCCCUCu- -3'
miRNA:   3'- cGCGCG---AG-UUGGUGGCgAGGGGGGug -5'
5577 3' -61.5 NC_001806.1 + 101072 0.66 0.644216
Target:  5'- aCGCGCUcCAGCUGCaCGCaggcgaUCagCCCCACa -3'
miRNA:   3'- cGCGCGA-GUUGGUG-GCG------AGg-GGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.