miRNA display CGI


Results 21 - 40 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5577 3' -61.5 NC_001806.1 + 90918 0.66 0.690394
Target:  5'- -gGCGUUUGACgaaaaccacgagggCGCCGCcCUCCCCGCc -3'
miRNA:   3'- cgCGCGAGUUG--------------GUGGCGaGGGGGGUG- -5'
5577 3' -61.5 NC_001806.1 + 19789 0.66 0.673763
Target:  5'- cCGCGUccccccuccUCcGCCcCCGCgUCCCCCCu- -3'
miRNA:   3'- cGCGCG---------AGuUGGuGGCG-AGGGGGGug -5'
5577 3' -61.5 NC_001806.1 + 48958 0.66 0.693316
Target:  5'- uUGCGC-CGGCCccgUCGCUCCCgUCCAUu -3'
miRNA:   3'- cGCGCGaGUUGGu--GGCGAGGG-GGGUG- -5'
5577 3' -61.5 NC_001806.1 + 327 0.66 0.63434
Target:  5'- cGCGCGCgc-GCaCGCCGCccggaccgCCgCCCGCc -3'
miRNA:   3'- -CGCGCGaguUG-GUGGCGa-------GGgGGGUG- -5'
5577 3' -61.5 NC_001806.1 + 52756 0.66 0.644216
Target:  5'- aUGCGaaCGACCcggucGCCGagCCCCCCGCu -3'
miRNA:   3'- cGCGCgaGUUGG-----UGGCgaGGGGGGUG- -5'
5577 3' -61.5 NC_001806.1 + 77567 0.66 0.63434
Target:  5'- aGUaCGCUgGAUCgGCCGUUCgCCCCCAg -3'
miRNA:   3'- -CGcGCGAgUUGG-UGGCGAG-GGGGGUg -5'
5577 3' -61.5 NC_001806.1 + 108779 0.66 0.663936
Target:  5'- aGCGUGCugUCGGCCugcacgUCGCUUCCCaCCGg -3'
miRNA:   3'- -CGCGCG--AGUUGGu-----GGCGAGGGG-GGUg -5'
5577 3' -61.5 NC_001806.1 + 101072 0.66 0.644216
Target:  5'- aCGCGCUcCAGCUGCaCGCaggcgaUCagCCCCACa -3'
miRNA:   3'- cGCGCGA-GUUGGUG-GCG------AGg-GGGGUG- -5'
5577 3' -61.5 NC_001806.1 + 91403 0.66 0.683559
Target:  5'- cCGgGUUCGAgggucggcCCACCGCgCCCCUCGu -3'
miRNA:   3'- cGCgCGAGUU--------GGUGGCGaGGGGGGUg -5'
5577 3' -61.5 NC_001806.1 + 23722 0.66 0.654084
Target:  5'- gGUGCGC-CGGgC-CCGC-CCCCgCCGCc -3'
miRNA:   3'- -CGCGCGaGUUgGuGGCGaGGGG-GGUG- -5'
5577 3' -61.5 NC_001806.1 + 77956 0.66 0.683559
Target:  5'- gGUGaCGCggCGgccccgggGCCGCCGCUCggaCCCCAg -3'
miRNA:   3'- -CGC-GCGa-GU--------UGGUGGCGAGg--GGGGUg -5'
5577 3' -61.5 NC_001806.1 + 82993 0.66 0.652112
Target:  5'- cGCGUGCgccccucccgccCAGCCAUgGCaacuucgCCCCCCGg -3'
miRNA:   3'- -CGCGCGa-----------GUUGGUGgCGa------GGGGGGUg -5'
5577 3' -61.5 NC_001806.1 + 75366 0.66 0.673763
Target:  5'- cGCGCGggUGGCCAUCGC-CCagCUCACg -3'
miRNA:   3'- -CGCGCgaGUUGGUGGCGaGGg-GGGUG- -5'
5577 3' -61.5 NC_001806.1 + 51819 0.66 0.663936
Target:  5'- cGUG-GC-CGGCCugCGCgacgCCCUCCAUc -3'
miRNA:   3'- -CGCgCGaGUUGGugGCGa---GGGGGGUG- -5'
5577 3' -61.5 NC_001806.1 + 45073 0.66 0.672782
Target:  5'- cGCGCGCcuguugaccagguUCAGuuGCaCGaCUCcgCCCCCGCg -3'
miRNA:   3'- -CGCGCG-------------AGUUggUG-GC-GAG--GGGGGUG- -5'
5577 3' -61.5 NC_001806.1 + 113466 0.66 0.693316
Target:  5'- gGgGCGUUCGACgACCGCaacuaCCCgGCg -3'
miRNA:   3'- -CgCGCGAGUUGgUGGCGagg--GGGgUG- -5'
5577 3' -61.5 NC_001806.1 + 136056 0.66 0.683559
Target:  5'- cCGCGCUC-GCUGUCGCUCUugcgCCCCAg -3'
miRNA:   3'- cGCGCGAGuUGGUGGCGAGG----GGGGUg -5'
5577 3' -61.5 NC_001806.1 + 119175 0.66 0.683559
Target:  5'- aCGuCGCUCugcuuggcGCCGCCGC-CCCgCCGg -3'
miRNA:   3'- cGC-GCGAGu-------UGGUGGCGaGGGgGGUg -5'
5577 3' -61.5 NC_001806.1 + 131694 0.66 0.641254
Target:  5'- -aGCGC-CAuuACCcuuuacgcgguaugGCUGC-CCCCCCGCg -3'
miRNA:   3'- cgCGCGaGU--UGG--------------UGGCGaGGGGGGUG- -5'
5577 3' -61.5 NC_001806.1 + 132678 0.67 0.628412
Target:  5'- cCGCGCUCcugggGGCCuggcccgcgguggggGCCagggucgucCUCCCCCCGCg -3'
miRNA:   3'- cGCGCGAG-----UUGG---------------UGGc--------GAGGGGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.