Results 1 - 20 of 29 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5577 | 5' | -56.6 | NC_001806.1 | + | 102202 | 0.66 | 0.868426 |
Target: 5'- -uAUGGuGUUCGCGGUu-GCCCgcAGCAg -3' miRNA: 3'- uuUACCuCAGGUGCCAucCGGG--UCGU- -5' |
|||||||
5577 | 5' | -56.6 | NC_001806.1 | + | 41169 | 0.66 | 0.868426 |
Target: 5'- ---cGGGGUCCACGc-GGGCCgCGGgAa -3' miRNA: 3'- uuuaCCUCAGGUGCcaUCCGG-GUCgU- -5' |
|||||||
5577 | 5' | -56.6 | NC_001806.1 | + | 132941 | 0.66 | 0.868426 |
Target: 5'- ---cGGAcccCCACGGccggacGGGCCUAGCAa -3' miRNA: 3'- uuuaCCUca-GGUGCCa-----UCCGGGUCGU- -5' |
|||||||
5577 | 5' | -56.6 | NC_001806.1 | + | 82729 | 0.66 | 0.866916 |
Target: 5'- ---cGGGGUCUGCGGggcggcggcgucgUcgggcgcuuuuauAGGCCCGGCGu -3' miRNA: 3'- uuuaCCUCAGGUGCC-------------A-------------UCCGGGUCGU- -5' |
|||||||
5577 | 5' | -56.6 | NC_001806.1 | + | 23299 | 0.66 | 0.860791 |
Target: 5'- ----aGAGUCC-CGGcccGGCCCGGCc -3' miRNA: 3'- uuuacCUCAGGuGCCau-CCGGGUCGu -5' |
|||||||
5577 | 5' | -56.6 | NC_001806.1 | + | 15857 | 0.66 | 0.844891 |
Target: 5'- --uUGGGG-CCGCGGgGGGCCgAGa- -3' miRNA: 3'- uuuACCUCaGGUGCCaUCCGGgUCgu -5' |
|||||||
5577 | 5' | -56.6 | NC_001806.1 | + | 98467 | 0.66 | 0.844891 |
Target: 5'- --cUGGAcuaCACGG-AGGUCCAGCGc -3' miRNA: 3'- uuuACCUcagGUGCCaUCCGGGUCGU- -5' |
|||||||
5577 | 5' | -56.6 | NC_001806.1 | + | 41805 | 0.66 | 0.839964 |
Target: 5'- ---cGGAGUCCACGGccccgcaauacgcgGGGgCgGGCGu -3' miRNA: 3'- uuuaCCUCAGGUGCCa-------------UCCgGgUCGU- -5' |
|||||||
5577 | 5' | -56.6 | NC_001806.1 | + | 27855 | 0.66 | 0.83664 |
Target: 5'- ---cGGGGccgccCCGCGGUGGGCCU-GCc -3' miRNA: 3'- uuuaCCUCa----GGUGCCAUCCGGGuCGu -5' |
|||||||
5577 | 5' | -56.6 | NC_001806.1 | + | 64143 | 0.66 | 0.83664 |
Target: 5'- -uGUGGcGcaugCCGCGcGU-GGCCCGGCAg -3' miRNA: 3'- uuUACCuCa---GGUGC-CAuCCGGGUCGU- -5' |
|||||||
5577 | 5' | -56.6 | NC_001806.1 | + | 19101 | 0.66 | 0.83664 |
Target: 5'- --uUGGGGcCgACGGgguggGGGCCCGGg- -3' miRNA: 3'- uuuACCUCaGgUGCCa----UCCGGGUCgu -5' |
|||||||
5577 | 5' | -56.6 | NC_001806.1 | + | 22565 | 0.67 | 0.819572 |
Target: 5'- uGAcgGGGG-CCGCGGggAGcCCCGGCGc -3' miRNA: 3'- -UUuaCCUCaGGUGCCa-UCcGGGUCGU- -5' |
|||||||
5577 | 5' | -56.6 | NC_001806.1 | + | 72083 | 0.67 | 0.810771 |
Target: 5'- ---gGGAGcCCGCGGcGGGCCU-GCu -3' miRNA: 3'- uuuaCCUCaGGUGCCaUCCGGGuCGu -5' |
|||||||
5577 | 5' | -56.6 | NC_001806.1 | + | 72344 | 0.67 | 0.80541 |
Target: 5'- gGGcgGGAG-CCAUGGUguuuuucgugccgucGGGCCCGGa- -3' miRNA: 3'- -UUuaCCUCaGGUGCCA---------------UCCGGGUCgu -5' |
|||||||
5577 | 5' | -56.6 | NC_001806.1 | + | 151110 | 0.67 | 0.792679 |
Target: 5'- ---gGGGGU-CGCGGgGGGCuCCGGCGc -3' miRNA: 3'- uuuaCCUCAgGUGCCaUCCG-GGUCGU- -5' |
|||||||
5577 | 5' | -56.6 | NC_001806.1 | + | 20698 | 0.67 | 0.783405 |
Target: 5'- uAAUGGAauuccGUUCGgGGUGGGCCCgccgggggGGCGg -3' miRNA: 3'- uUUACCU-----CAGGUgCCAUCCGGG--------UCGU- -5' |
|||||||
5577 | 5' | -56.6 | NC_001806.1 | + | 127536 | 0.68 | 0.773991 |
Target: 5'- ---cGGGGUCCuCGGcGGGCUCGGgGu -3' miRNA: 3'- uuuaCCUCAGGuGCCaUCCGGGUCgU- -5' |
|||||||
5577 | 5' | -56.6 | NC_001806.1 | + | 149424 | 0.68 | 0.72516 |
Target: 5'- ---gGGGGUcCCACGGcgaccccGGGCCCuGCGu -3' miRNA: 3'- uuuaCCUCA-GGUGCCa------UCCGGGuCGU- -5' |
|||||||
5577 | 5' | -56.6 | NC_001806.1 | + | 34278 | 0.69 | 0.704984 |
Target: 5'- -uGUGGGGUCCcggggGCGGgaugGGGUUUAGCGg -3' miRNA: 3'- uuUACCUCAGG-----UGCCa---UCCGGGUCGU- -5' |
|||||||
5577 | 5' | -56.6 | NC_001806.1 | + | 43299 | 0.69 | 0.694796 |
Target: 5'- ---cGGAG-CCGCGGcugcaggAGGCCCuGGCGg -3' miRNA: 3'- uuuaCCUCaGGUGCCa------UCCGGG-UCGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home