miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5577 5' -56.6 NC_001806.1 + 11327 0.76 0.318905
Target:  5'- -cGUGGGGUCCACGGggGGcgucggaaGCCCAGCc -3'
miRNA:   3'- uuUACCUCAGGUGCCa-UC--------CGGGUCGu -5'
5577 5' -56.6 NC_001806.1 + 15857 0.66 0.844891
Target:  5'- --uUGGGG-CCGCGGgGGGCCgAGa- -3'
miRNA:   3'- uuuACCUCaGGUGCCaUCCGGgUCgu -5'
5577 5' -56.6 NC_001806.1 + 19101 0.66 0.83664
Target:  5'- --uUGGGGcCgACGGgguggGGGCCCGGg- -3'
miRNA:   3'- uuuACCUCaGgUGCCa----UCCGGGUCgu -5'
5577 5' -56.6 NC_001806.1 + 20698 0.67 0.783405
Target:  5'- uAAUGGAauuccGUUCGgGGUGGGCCCgccgggggGGCGg -3'
miRNA:   3'- uUUACCU-----CAGGUgCCAUCCGGG--------UCGU- -5'
5577 5' -56.6 NC_001806.1 + 22565 0.67 0.819572
Target:  5'- uGAcgGGGG-CCGCGGggAGcCCCGGCGc -3'
miRNA:   3'- -UUuaCCUCaGGUGCCa-UCcGGGUCGU- -5'
5577 5' -56.6 NC_001806.1 + 23299 0.66 0.860791
Target:  5'- ----aGAGUCC-CGGcccGGCCCGGCc -3'
miRNA:   3'- uuuacCUCAGGuGCCau-CCGGGUCGu -5'
5577 5' -56.6 NC_001806.1 + 27855 0.66 0.83664
Target:  5'- ---cGGGGccgccCCGCGGUGGGCCU-GCc -3'
miRNA:   3'- uuuaCCUCa----GGUGCCAUCCGGGuCGu -5'
5577 5' -56.6 NC_001806.1 + 30643 0.71 0.581137
Target:  5'- ---gGGGGgcgcggCCAgGGUGGGCCCGGg- -3'
miRNA:   3'- uuuaCCUCa-----GGUgCCAUCCGGGUCgu -5'
5577 5' -56.6 NC_001806.1 + 34278 0.69 0.704984
Target:  5'- -uGUGGGGUCCcggggGCGGgaugGGGUUUAGCGg -3'
miRNA:   3'- uuUACCUCAGG-----UGCCa---UCCGGGUCGU- -5'
5577 5' -56.6 NC_001806.1 + 37354 0.74 0.425445
Target:  5'- uAAUGGGGUCCugGG--GGCgCAGCGg -3'
miRNA:   3'- uUUACCUCAGGugCCauCCGgGUCGU- -5'
5577 5' -56.6 NC_001806.1 + 37801 0.73 0.46224
Target:  5'- ---gGGGGUCCGCGGgcggggGGGCaaucgCCAGCGu -3'
miRNA:   3'- uuuaCCUCAGGUGCCa-----UCCG-----GGUCGU- -5'
5577 5' -56.6 NC_001806.1 + 41169 0.66 0.868426
Target:  5'- ---cGGGGUCCACGc-GGGCCgCGGgAa -3'
miRNA:   3'- uuuaCCUCAGGUGCcaUCCGG-GUCgU- -5'
5577 5' -56.6 NC_001806.1 + 41805 0.66 0.839964
Target:  5'- ---cGGAGUCCACGGccccgcaauacgcgGGGgCgGGCGu -3'
miRNA:   3'- uuuaCCUCAGGUGCCa-------------UCCgGgUCGU- -5'
5577 5' -56.6 NC_001806.1 + 43299 0.69 0.694796
Target:  5'- ---cGGAG-CCGCGGcugcaggAGGCCCuGGCGg -3'
miRNA:   3'- uuuaCCUCaGGUGCCa------UCCGGG-UCGU- -5'
5577 5' -56.6 NC_001806.1 + 49423 0.71 0.569853
Target:  5'- uGAUGaGGUuccCCGCGGUccuccgcAGGCCCGGCAg -3'
miRNA:   3'- uUUACcUCA---GGUGCCA-------UCCGGGUCGU- -5'
5577 5' -56.6 NC_001806.1 + 51651 0.69 0.684555
Target:  5'- --cUGGaAGUaCCugcagACGGUGGuGCCCAGCGg -3'
miRNA:   3'- uuuACC-UCA-GG-----UGCCAUC-CGGGUCGU- -5'
5577 5' -56.6 NC_001806.1 + 64143 0.66 0.83664
Target:  5'- -uGUGGcGcaugCCGCGcGU-GGCCCGGCAg -3'
miRNA:   3'- uuUACCuCa---GGUGC-CAuCCGGGUCGU- -5'
5577 5' -56.6 NC_001806.1 + 72083 0.67 0.810771
Target:  5'- ---gGGAGcCCGCGGcGGGCCU-GCu -3'
miRNA:   3'- uuuaCCUCaGGUGCCaUCCGGGuCGu -5'
5577 5' -56.6 NC_001806.1 + 72344 0.67 0.80541
Target:  5'- gGGcgGGAG-CCAUGGUguuuuucgugccgucGGGCCCGGa- -3'
miRNA:   3'- -UUuaCCUCaGGUGCCA---------------UCCGGGUCgu -5'
5577 5' -56.6 NC_001806.1 + 82729 0.66 0.866916
Target:  5'- ---cGGGGUCUGCGGggcggcggcgucgUcgggcgcuuuuauAGGCCCGGCGu -3'
miRNA:   3'- uuuaCCUCAGGUGCC-------------A-------------UCCGGGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.