miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5578 3' -56.9 NC_001806.1 + 151529 0.74 0.484381
Target:  5'- uUGGGaCGgcGCCCGUgGGCCCGGgcggCCg -3'
miRNA:   3'- gACCC-GCa-UGGGCA-CUGGGCCaaa-GG- -5'
5578 3' -56.9 NC_001806.1 + 151469 0.71 0.64118
Target:  5'- -cGGGCGcGCUCcUGACCgCGGgUUCCg -3'
miRNA:   3'- gaCCCGCaUGGGcACUGG-GCCaAAGG- -5'
5578 3' -56.9 NC_001806.1 + 150110 0.69 0.777249
Target:  5'- -gGGGCGgcCCCGUc-CCCGGggaCCa -3'
miRNA:   3'- gaCCCGCauGGGCAcuGGGCCaaaGG- -5'
5578 3' -56.9 NC_001806.1 + 143146 0.69 0.777249
Target:  5'- aUGGGCGgGCCU---ACuuGGUUUCCc -3'
miRNA:   3'- gACCCGCaUGGGcacUGggCCAAAGG- -5'
5578 3' -56.9 NC_001806.1 + 135250 0.68 0.821147
Target:  5'- aUGGGCGcgccUACCCGgggGGCCCGa----- -3'
miRNA:   3'- gACCCGC----AUGGGCa--CUGGGCcaaagg -5'
5578 3' -56.9 NC_001806.1 + 131498 0.66 0.875493
Target:  5'- -gGGGCcaaguugGCCCccgGACCCGGg--CCg -3'
miRNA:   3'- gaCCCGca-----UGGGca-CUGGGCCaaaGG- -5'
5578 3' -56.9 NC_001806.1 + 125568 0.71 0.661224
Target:  5'- cCUGGGgGcacccacGCCCGcGACCCGGacgCCg -3'
miRNA:   3'- -GACCCgCa------UGGGCaCUGGGCCaaaGG- -5'
5578 3' -56.9 NC_001806.1 + 124840 1.11 0.00215
Target:  5'- cCUGGGCGUACCCGUGACCCGGUUUCCc -3'
miRNA:   3'- -GACCCGCAUGGGCACUGGGCCAAAGG- -5'
5578 3' -56.9 NC_001806.1 + 121411 0.68 0.830284
Target:  5'- -cGGGCGcgugcugcgccuuggGCCCGggGGCCUGGUggcaccUCCc -3'
miRNA:   3'- gaCCCGCa--------------UGGGCa-CUGGGCCAa-----AGG- -5'
5578 3' -56.9 NC_001806.1 + 117989 0.66 0.875493
Target:  5'- -cGGGUGuUGgCCGUGAaCgCGGgaUCCa -3'
miRNA:   3'- gaCCCGC-AUgGGCACU-GgGCCaaAGG- -5'
5578 3' -56.9 NC_001806.1 + 116548 0.66 0.902083
Target:  5'- gUGGcGCG-GCUCGUGGCCagGGgcaUCCg -3'
miRNA:   3'- gACC-CGCaUGGGCACUGGg-CCaa-AGG- -5'
5578 3' -56.9 NC_001806.1 + 114921 0.71 0.64118
Target:  5'- cCUGGGCGUgggcuacaccGCCguCGUGGCCaCGGcaaccgUCCg -3'
miRNA:   3'- -GACCCGCA----------UGG--GCACUGG-GCCaa----AGG- -5'
5578 3' -56.9 NC_001806.1 + 113301 0.67 0.837604
Target:  5'- -gGGGaCGUuccCCCGgccGGCCCGGgggagaUCCa -3'
miRNA:   3'- gaCCC-GCAu--GGGCa--CUGGGCCaa----AGG- -5'
5578 3' -56.9 NC_001806.1 + 112258 0.7 0.700976
Target:  5'- -aGGGUG-GCCCGggcGACCCuGGUcgCCg -3'
miRNA:   3'- gaCCCGCaUGGGCa--CUGGG-CCAaaGG- -5'
5578 3' -56.9 NC_001806.1 + 111849 0.66 0.875493
Target:  5'- -gGuGGCGUGCgUGUGuACCaaGUUUCCg -3'
miRNA:   3'- gaC-CCGCAUGgGCAC-UGGgcCAAAGG- -5'
5578 3' -56.9 NC_001806.1 + 110330 0.66 0.895764
Target:  5'- -cGGGCGUGuuCCCGacacGGCCUacugGGuUUUCCg -3'
miRNA:   3'- gaCCCGCAU--GGGCa---CUGGG----CC-AAAGG- -5'
5578 3' -56.9 NC_001806.1 + 92386 0.77 0.318748
Target:  5'- -aGGGCGacguUGCCCGcgUGACCCuggGGUUUCCc -3'
miRNA:   3'- gaCCCGC----AUGGGC--ACUGGG---CCAAAGG- -5'
5578 3' -56.9 NC_001806.1 + 91201 0.66 0.899582
Target:  5'- -gGGGCGUACCUGgcgcgcgccgcggGACUCGuGggggCCa -3'
miRNA:   3'- gaCCCGCAUGGGCa------------CUGGGC-Caaa-GG- -5'
5578 3' -56.9 NC_001806.1 + 84017 0.71 0.64118
Target:  5'- gUGGGCGUACgCG-GAUCUGG--UCCu -3'
miRNA:   3'- gACCCGCAUGgGCaCUGGGCCaaAGG- -5'
5578 3' -56.9 NC_001806.1 + 80250 0.83 0.155746
Target:  5'- -aGGGCGguguugcGCCCGgaGGCCCGGUUUCCc -3'
miRNA:   3'- gaCCCGCa------UGGGCa-CUGGGCCAAAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.