miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5579 3' -63.8 NC_001806.1 + 123820 1.08 0.000807
Target:  5'- gGUCCCGCCACCGAUCCGGCCUCCGCGa -3'
miRNA:   3'- -CAGGGCGGUGGCUAGGCCGGAGGCGC- -5'
5579 3' -63.8 NC_001806.1 + 51811 0.81 0.072836
Target:  5'- --gCCGCCACCGuggCCGGCCUgCGCGa -3'
miRNA:   3'- cagGGCGGUGGCua-GGCCGGAgGCGC- -5'
5579 3' -63.8 NC_001806.1 + 72593 0.77 0.132353
Target:  5'- aGUCgCCGCCACCGAcCCgGGCCcgUCGCGa -3'
miRNA:   3'- -CAG-GGCGGUGGCUaGG-CCGGa-GGCGC- -5'
5579 3' -63.8 NC_001806.1 + 20056 0.75 0.164557
Target:  5'- cUCCCGCUcCCGGUCCGcGUgCUCCGCa -3'
miRNA:   3'- cAGGGCGGuGGCUAGGC-CG-GAGGCGc -5'
5579 3' -63.8 NC_001806.1 + 26381 0.74 0.189783
Target:  5'- -gCCCGCCGCCGccgccAUCgCGGCCcCCGCc -3'
miRNA:   3'- caGGGCGGUGGC-----UAG-GCCGGaGGCGc -5'
5579 3' -63.8 NC_001806.1 + 126580 0.74 0.19892
Target:  5'- -cUCCGCCGCgGAUCgGGCCUUgGUGg -3'
miRNA:   3'- caGGGCGGUGgCUAGgCCGGAGgCGC- -5'
5579 3' -63.8 NC_001806.1 + 4631 0.72 0.25565
Target:  5'- --gCCGCCACCGG-CCGugacgacGUCUCCGCGg -3'
miRNA:   3'- cagGGCGGUGGCUaGGC-------CGGAGGCGC- -5'
5579 3' -63.8 NC_001806.1 + 20721 0.72 0.273435
Target:  5'- -gCCCGCCgggggggcgggggGCCGG--CGGCCUCCGCu -3'
miRNA:   3'- caGGGCGG-------------UGGCUagGCCGGAGGCGc -5'
5579 3' -63.8 NC_001806.1 + 73984 0.72 0.274045
Target:  5'- -gCCCGCCccgGCCGGggCGGCC-CCGCa -3'
miRNA:   3'- caGGGCGG---UGGCUagGCCGGaGGCGc -5'
5579 3' -63.8 NC_001806.1 + 150703 0.72 0.280201
Target:  5'- aGUCCCGCCcCCGAggCGGCCcgccCUGUGa -3'
miRNA:   3'- -CAGGGCGGuGGCUagGCCGGa---GGCGC- -5'
5579 3' -63.8 NC_001806.1 + 44120 0.72 0.280201
Target:  5'- gGUCCCGCgcuCGCuCGGgggGGCCUCCGCGu -3'
miRNA:   3'- -CAGGGCG---GUG-GCUaggCCGGAGGCGC- -5'
5579 3' -63.8 NC_001806.1 + 30752 0.72 0.280201
Target:  5'- cUUCCGCCGCCGGggCCGcguccuCCUCCGCu -3'
miRNA:   3'- cAGGGCGGUGGCUa-GGCc-----GGAGGCGc -5'
5579 3' -63.8 NC_001806.1 + 30255 0.72 0.286466
Target:  5'- --gCCGCCuCCGGggcCCGGCCcCCGCGc -3'
miRNA:   3'- cagGGCGGuGGCUa--GGCCGGaGGCGC- -5'
5579 3' -63.8 NC_001806.1 + 135008 0.72 0.286466
Target:  5'- -cCCCGCC-CUGGUCCGGCgcgcCUCgCGCa -3'
miRNA:   3'- caGGGCGGuGGCUAGGCCG----GAG-GCGc -5'
5579 3' -63.8 NC_001806.1 + 75274 0.72 0.289003
Target:  5'- --gCCGCCAgCGAcCCGGCCUCCccccuggccuuccuaGCGg -3'
miRNA:   3'- cagGGCGGUgGCUaGGCCGGAGG---------------CGC- -5'
5579 3' -63.8 NC_001806.1 + 80634 0.71 0.292841
Target:  5'- --aCCGCCcauCCGucCCGGCUUCCGCGu -3'
miRNA:   3'- cagGGCGGu--GGCuaGGCCGGAGGCGC- -5'
5579 3' -63.8 NC_001806.1 + 1707 0.71 0.292841
Target:  5'- gGUCCCcgagGCCGCCGc-CCGGCCgUCCaGCGc -3'
miRNA:   3'- -CAGGG----CGGUGGCuaGGCCGG-AGG-CGC- -5'
5579 3' -63.8 NC_001806.1 + 1329 0.71 0.298021
Target:  5'- uUCCCGCCGCgGGggcguggccaagCCcGCCUCCGCc -3'
miRNA:   3'- cAGGGCGGUGgCUa-----------GGcCGGAGGCGc -5'
5579 3' -63.8 NC_001806.1 + 81911 0.71 0.319448
Target:  5'- uUCCgGCCACCcccagcCCGGCCUCgGCc -3'
miRNA:   3'- cAGGgCGGUGGcua---GGCCGGAGgCGc -5'
5579 3' -63.8 NC_001806.1 + 87305 0.71 0.319448
Target:  5'- cUCCCGCgCGCCc-UCCGGCUcCCGCu -3'
miRNA:   3'- cAGGGCG-GUGGcuAGGCCGGaGGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.