miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5579 3' -63.8 NC_001806.1 + 1329 0.71 0.298021
Target:  5'- uUCCCGCCGCgGGggcguggccaagCCcGCCUCCGCc -3'
miRNA:   3'- cAGGGCGGUGgCUa-----------GGcCGGAGGCGc -5'
5579 3' -63.8 NC_001806.1 + 1551 0.71 0.326377
Target:  5'- -cCCgCGCCACCGggCCGGgCCggCGCGc -3'
miRNA:   3'- caGG-GCGGUGGCuaGGCC-GGagGCGC- -5'
5579 3' -63.8 NC_001806.1 + 1707 0.71 0.292841
Target:  5'- gGUCCCcgagGCCGCCGc-CCGGCCgUCCaGCGc -3'
miRNA:   3'- -CAGGG----CGGUGGCuaGGCCGG-AGG-CGC- -5'
5579 3' -63.8 NC_001806.1 + 1946 0.69 0.418022
Target:  5'- gGUCCCG-CGCCG--CCGGCCagCGCa -3'
miRNA:   3'- -CAGGGCgGUGGCuaGGCCGGagGCGc -5'
5579 3' -63.8 NC_001806.1 + 2210 0.67 0.523693
Target:  5'- -gCCCGCCcaggcgGCCGuGUCCGGC--CCGCa -3'
miRNA:   3'- caGGGCGG------UGGC-UAGGCCGgaGGCGc -5'
5579 3' -63.8 NC_001806.1 + 2317 0.68 0.487155
Target:  5'- -cCCCGCCGCCGG-CCaGGUCcUCGCc -3'
miRNA:   3'- caGGGCGGUGGCUaGG-CCGGaGGCGc -5'
5579 3' -63.8 NC_001806.1 + 2494 0.69 0.401689
Target:  5'- cGUCgCCGCCGCCGcacgCGGCCUggGCGg -3'
miRNA:   3'- -CAG-GGCGGUGGCuag-GCCGGAggCGC- -5'
5579 3' -63.8 NC_001806.1 + 3975 0.68 0.478207
Target:  5'- gGUUCUggaGCCACC---CCaGGCCUCCGCGu -3'
miRNA:   3'- -CAGGG---CGGUGGcuaGG-CCGGAGGCGC- -5'
5579 3' -63.8 NC_001806.1 + 4631 0.72 0.25565
Target:  5'- --gCCGCCACCGG-CCGugacgacGUCUCCGCGg -3'
miRNA:   3'- cagGGCGGUGGCUaGGC-------CGGAGGCGC- -5'
5579 3' -63.8 NC_001806.1 + 4931 0.66 0.570738
Target:  5'- cGUCCuCGCCGgCG-UCgGuGCCcgCCGCGg -3'
miRNA:   3'- -CAGG-GCGGUgGCuAGgC-CGGa-GGCGC- -5'
5579 3' -63.8 NC_001806.1 + 5576 0.7 0.362678
Target:  5'- -cCCCGCC-CCGAcgCCGGCacgCCGgGg -3'
miRNA:   3'- caGGGCGGuGGCUa-GGCCGga-GGCgC- -5'
5579 3' -63.8 NC_001806.1 + 5698 0.67 0.527406
Target:  5'- -cCCCGCauggcaucucauuacCGcCCGAUCCGGCgguUUCCGCu -3'
miRNA:   3'- caGGGCG---------------GU-GGCUAGGCCG---GAGGCGc -5'
5579 3' -63.8 NC_001806.1 + 9848 0.68 0.469342
Target:  5'- uGUUCCaCCACCGcguUCCGGUacugcgCCGCGg -3'
miRNA:   3'- -CAGGGcGGUGGCu--AGGCCGga----GGCGC- -5'
5579 3' -63.8 NC_001806.1 + 20056 0.75 0.164557
Target:  5'- cUCCCGCUcCCGGUCCGcGUgCUCCGCa -3'
miRNA:   3'- cAGGGCGGuGGCUAGGC-CG-GAGGCGc -5'
5579 3' -63.8 NC_001806.1 + 20164 0.66 0.551768
Target:  5'- -cCCCGCCGcCCGggCCcGCCcCCGgGg -3'
miRNA:   3'- caGGGCGGU-GGCuaGGcCGGaGGCgC- -5'
5579 3' -63.8 NC_001806.1 + 20368 0.67 0.496181
Target:  5'- -gCCCGCCGucCCGuuggucCCGGCgUCCgGCGg -3'
miRNA:   3'- caGGGCGGU--GGCua----GGCCGgAGG-CGC- -5'
5579 3' -63.8 NC_001806.1 + 20721 0.72 0.273435
Target:  5'- -gCCCGCCgggggggcgggggGCCGG--CGGCCUCCGCu -3'
miRNA:   3'- caGGGCGG-------------UGGCUagGCCGGAGGCGc -5'
5579 3' -63.8 NC_001806.1 + 20950 0.67 0.514454
Target:  5'- uUCCCaCCcagcaucgACCGGUCCGcGCUaguUCCGCGu -3'
miRNA:   3'- cAGGGcGG--------UGGCUAGGC-CGG---AGGCGC- -5'
5579 3' -63.8 NC_001806.1 + 21144 0.66 0.580283
Target:  5'- -cCCCGggccCCACCGA-CgGGCCgCCGCc -3'
miRNA:   3'- caGGGC----GGUGGCUaGgCCGGaGGCGc -5'
5579 3' -63.8 NC_001806.1 + 21500 0.69 0.401689
Target:  5'- -gCCgGCgACCGGgccCCGGCCcggggCCGCGa -3'
miRNA:   3'- caGGgCGgUGGCUa--GGCCGGa----GGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.