Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5579 | 5' | -57.3 | NC_001806.1 | + | 123854 | 1.06 | 0.003449 |
Target: 5'- uCGCGCGGGACUAUCCCGAUGGCGAAUg -3' miRNA: 3'- -GCGCGCCCUGAUAGGGCUACCGCUUA- -5' |
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5579 | 5' | -57.3 | NC_001806.1 | + | 49482 | 0.74 | 0.435078 |
Target: 5'- aCGCGCGGG-CUAUUuuGG-GGCGggUc -3' miRNA: 3'- -GCGCGCCCuGAUAGggCUaCCGCuuA- -5' |
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5579 | 5' | -57.3 | NC_001806.1 | + | 140729 | 0.71 | 0.555544 |
Target: 5'- gGCGCGGGGCguuUCCCGAaaacgaggaggucuUGGUGc-- -3' miRNA: 3'- gCGCGCCCUGau-AGGGCU--------------ACCGCuua -5' |
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5579 | 5' | -57.3 | NC_001806.1 | + | 23979 | 0.71 | 0.558532 |
Target: 5'- aGCGCGgcGGGCUGUCCUGccugcUGGCGGc- -3' miRNA: 3'- gCGCGC--CCUGAUAGGGCu----ACCGCUua -5' |
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5579 | 5' | -57.3 | NC_001806.1 | + | 148188 | 0.71 | 0.588629 |
Target: 5'- gGCGCGGGGCg--UCCGGcggggGGCGGGc -3' miRNA: 3'- gCGCGCCCUGauaGGGCUa----CCGCUUa -5' |
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5579 | 5' | -57.3 | NC_001806.1 | + | 133688 | 0.7 | 0.619004 |
Target: 5'- uCGUGCGuGuCUGUCCCGGaGGCGGGg -3' miRNA: 3'- -GCGCGCcCuGAUAGGGCUaCCGCUUa -5' |
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5579 | 5' | -57.3 | NC_001806.1 | + | 143278 | 0.7 | 0.659603 |
Target: 5'- uGCGCGGGAg-GUgUCGGUGGUGGu- -3' miRNA: 3'- gCGCGCCCUgaUAgGGCUACCGCUua -5' |
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5579 | 5' | -57.3 | NC_001806.1 | + | 34256 | 0.69 | 0.668709 |
Target: 5'- uGCGUguggcugGGGGCUuauaugugggGUCCCGggGGCGGGa -3' miRNA: 3'- gCGCG-------CCCUGA----------UAGGGCuaCCGCUUa -5' |
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5579 | 5' | -57.3 | NC_001806.1 | + | 45302 | 0.69 | 0.689852 |
Target: 5'- cCGCGCGGGGagccgCCCGGcgaggagGGCGGGc -3' miRNA: 3'- -GCGCGCCCUgaua-GGGCUa------CCGCUUa -5' |
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5579 | 5' | -57.3 | NC_001806.1 | + | 37796 | 0.69 | 0.709795 |
Target: 5'- gGCGCGGGGg---UCCGcgGGCGGGg -3' miRNA: 3'- gCGCGCCCUgauaGGGCuaCCGCUUa -5' |
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5579 | 5' | -57.3 | NC_001806.1 | + | 55071 | 0.69 | 0.719674 |
Target: 5'- cCGCGUGGGGCUggaggGUCagagaCGGggGGCGGAa -3' miRNA: 3'- -GCGCGCCCUGA-----UAGg----GCUa-CCGCUUa -5' |
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5579 | 5' | -57.3 | NC_001806.1 | + | 48886 | 0.68 | 0.729479 |
Target: 5'- aGCGCGGGACcguuUCCCauuUGGcCGGGg -3' miRNA: 3'- gCGCGCCCUGau--AGGGcu-ACC-GCUUa -5' |
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5579 | 5' | -57.3 | NC_001806.1 | + | 55540 | 0.68 | 0.739201 |
Target: 5'- --aGUGGGGCgg-CCCGAcuUGGCGGGg -3' miRNA: 3'- gcgCGCCCUGauaGGGCU--ACCGCUUa -5' |
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5579 | 5' | -57.3 | NC_001806.1 | + | 147694 | 0.68 | 0.739201 |
Target: 5'- gGCGCgGGGGCgggcCCCGGaGGCGGc- -3' miRNA: 3'- gCGCG-CCCUGaua-GGGCUaCCGCUua -5' |
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5579 | 5' | -57.3 | NC_001806.1 | + | 41624 | 0.68 | 0.739201 |
Target: 5'- gGUGUGGGgcccuGCUGUUCCG-UGGCGGc- -3' miRNA: 3'- gCGCGCCC-----UGAUAGGGCuACCGCUua -5' |
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5579 | 5' | -57.3 | NC_001806.1 | + | 147743 | 0.68 | 0.758361 |
Target: 5'- cCGCGCGGGggcGCgcggGUCCCGAc-GCGGc- -3' miRNA: 3'- -GCGCGCCC---UGa---UAGGGCUacCGCUua -5' |
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5579 | 5' | -57.3 | NC_001806.1 | + | 113823 | 0.68 | 0.76778 |
Target: 5'- uCGUGUGGGACUGUgacgcCCUGAUgcGGCGc-- -3' miRNA: 3'- -GCGCGCCCUGAUA-----GGGCUA--CCGCuua -5' |
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5579 | 5' | -57.3 | NC_001806.1 | + | 52734 | 0.68 | 0.76778 |
Target: 5'- gGCGCGGGGCccccgcuUCCgGAUG-CGAAc -3' miRNA: 3'- gCGCGCCCUGau-----AGGgCUACcGCUUa -5' |
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5579 | 5' | -57.3 | NC_001806.1 | + | 25516 | 0.68 | 0.777081 |
Target: 5'- aGCGCGGGACgcgCCgGGgagGGCuGGGg -3' miRNA: 3'- gCGCGCCCUGauaGGgCUa--CCG-CUUa -5' |
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5579 | 5' | -57.3 | NC_001806.1 | + | 50020 | 0.68 | 0.777081 |
Target: 5'- gCGCGCGGGuCUGaCCUGGacgacagGGCGGc- -3' miRNA: 3'- -GCGCGCCCuGAUaGGGCUa------CCGCUua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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