miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5579 5' -57.3 NC_001806.1 + 3137 0.67 0.8299
Target:  5'- aGCGCGGGGCccagggCCCc--GGCGAc- -3'
miRNA:   3'- gCGCGCCCUGaua---GGGcuaCCGCUua -5'
5579 5' -57.3 NC_001806.1 + 5939 0.66 0.846174
Target:  5'- gCGgGCGGGACcg-CCCcaaGggGGCGGGg -3'
miRNA:   3'- -GCgCGCCCUGauaGGG---CuaCCGCUUa -5'
5579 5' -57.3 NC_001806.1 + 6066 0.66 0.83813
Target:  5'- cCGCGCcggccccgGGGGCgggCCCGGgcGGCGGGg -3'
miRNA:   3'- -GCGCG--------CCCUGauaGGGCUa-CCGCUUa -5'
5579 5' -57.3 NC_001806.1 + 10411 0.68 0.777081
Target:  5'- aGC-CGGGGg-GUCCCGcUGGCGGGa -3'
miRNA:   3'- gCGcGCCCUgaUAGGGCuACCGCUUa -5'
5579 5' -57.3 NC_001806.1 + 18961 0.67 0.786253
Target:  5'- uGCGUGGGG--GUCCCG--GGCGAc- -3'
miRNA:   3'- gCGCGCCCUgaUAGGGCuaCCGCUua -5'
5579 5' -57.3 NC_001806.1 + 21602 0.66 0.846174
Target:  5'- cCGcCGCGGaGACgucGUCacggCCGGUGGCGGc- -3'
miRNA:   3'- -GC-GCGCC-CUGa--UAG----GGCUACCGCUua -5'
5579 5' -57.3 NC_001806.1 + 22190 0.68 0.777081
Target:  5'- cCGUGUGGG-Cg--CCCGAgcugGGCGAc- -3'
miRNA:   3'- -GCGCGCCCuGauaGGGCUa---CCGCUua -5'
5579 5' -57.3 NC_001806.1 + 23979 0.71 0.558532
Target:  5'- aGCGCGgcGGGCUGUCCUGccugcUGGCGGc- -3'
miRNA:   3'- gCGCGC--CCUGAUAGGGCu----ACCGCUua -5'
5579 5' -57.3 NC_001806.1 + 25516 0.68 0.777081
Target:  5'- aGCGCGGGACgcgCCgGGgagGGCuGGGg -3'
miRNA:   3'- gCGCGCCCUGauaGGgCUa--CCG-CUUa -5'
5579 5' -57.3 NC_001806.1 + 30895 0.67 0.824877
Target:  5'- aCGCGCcacgcggagacuuccGGGGCcGUcCCCGcgGGCGGc- -3'
miRNA:   3'- -GCGCG---------------CCCUGaUA-GGGCuaCCGCUua -5'
5579 5' -57.3 NC_001806.1 + 33618 0.67 0.80418
Target:  5'- gGCGCGGGGCggggggCCgGAUacccacacgGGCGGGg -3'
miRNA:   3'- gCGCGCCCUGaua---GGgCUA---------CCGCUUa -5'
5579 5' -57.3 NC_001806.1 + 33975 0.66 0.854028
Target:  5'- uCGUGCGGGcCggggGUCgCCGGggcaggGGCGGGg -3'
miRNA:   3'- -GCGCGCCCuGa---UAG-GGCUa-----CCGCUUa -5'
5579 5' -57.3 NC_001806.1 + 34256 0.69 0.668709
Target:  5'- uGCGUguggcugGGGGCUuauaugugggGUCCCGggGGCGGGa -3'
miRNA:   3'- gCGCG-------CCCUGA----------UAGGGCuaCCGCUUa -5'
5579 5' -57.3 NC_001806.1 + 34361 0.66 0.854028
Target:  5'- -aCGgGGGACcggggcugggUAUCCCGAggugGGUGggUg -3'
miRNA:   3'- gcGCgCCCUG----------AUAGGGCUa---CCGCuuA- -5'
5579 5' -57.3 NC_001806.1 + 37796 0.69 0.709795
Target:  5'- gGCGCGGGGg---UCCGcgGGCGGGg -3'
miRNA:   3'- gCGCGCCCUgauaGGGCuaCCGCUUa -5'
5579 5' -57.3 NC_001806.1 + 41624 0.68 0.739201
Target:  5'- gGUGUGGGgcccuGCUGUUCCG-UGGCGGc- -3'
miRNA:   3'- gCGCGCCC-----UGAUAGGGCuACCGCUua -5'
5579 5' -57.3 NC_001806.1 + 45302 0.69 0.689852
Target:  5'- cCGCGCGGGGagccgCCCGGcgaggagGGCGGGc -3'
miRNA:   3'- -GCGCGCCCUgaua-GGGCUa------CCGCUUa -5'
5579 5' -57.3 NC_001806.1 + 46915 0.66 0.861684
Target:  5'- cCGUGCGGGuuGCUuaaaugCgUGGUGGCGAc- -3'
miRNA:   3'- -GCGCGCCC--UGAua----GgGCUACCGCUua -5'
5579 5' -57.3 NC_001806.1 + 48886 0.68 0.729479
Target:  5'- aGCGCGGGACcguuUCCCauuUGGcCGGGg -3'
miRNA:   3'- gCGCGCCCUGau--AGGGcu-ACC-GCUUa -5'
5579 5' -57.3 NC_001806.1 + 49482 0.74 0.435078
Target:  5'- aCGCGCGGG-CUAUUuuGG-GGCGggUc -3'
miRNA:   3'- -GCGCGCCCuGAUAGggCUaCCGCuuA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.