miRNA display CGI


Results 41 - 60 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5580 3' -58.1 NC_001806.1 + 123842 0.67 0.775625
Target:  5'- cCGCGaGCGGCuucgcgcgGGAcUAUCCCGAUgGCg -3'
miRNA:   3'- aGCGC-CGCCG--------CUUcAUGGGGCUAgUG- -5'
5580 3' -58.1 NC_001806.1 + 95595 0.67 0.775625
Target:  5'- cUGCGGgucagcguccaCGGCGAGGUgcuGCCCgCGAcguUCGCc -3'
miRNA:   3'- aGCGCC-----------GCCGCUUCA---UGGG-GCU---AGUG- -5'
5580 3' -58.1 NC_001806.1 + 72089 0.67 0.775625
Target:  5'- cCGCGGCGGgccugcUGGAGacacaaUGCCCCGcaCACa -3'
miRNA:   3'- aGCGCCGCC------GCUUC------AUGGGGCuaGUG- -5'
5580 3' -58.1 NC_001806.1 + 3017 0.67 0.76641
Target:  5'- gCGuCGGCGGCGuccGGUGCgCUGGcCGCc -3'
miRNA:   3'- aGC-GCCGCCGCu--UCAUGgGGCUaGUG- -5'
5580 3' -58.1 NC_001806.1 + 37312 0.67 0.76641
Target:  5'- -gGCGcGUGGCGAGGUuauccagcacaGCCgCGGUCGu -3'
miRNA:   3'- agCGC-CGCCGCUUCA-----------UGGgGCUAGUg -5'
5580 3' -58.1 NC_001806.1 + 24541 0.67 0.76641
Target:  5'- -gGCGGCGGCcucGggG-ACCaCCGA-CGCc -3'
miRNA:   3'- agCGCCGCCG---CuuCaUGG-GGCUaGUG- -5'
5580 3' -58.1 NC_001806.1 + 38289 0.67 0.76641
Target:  5'- -gGCGaGCGGCGucGAGUaucgGCUCCGGUC-Cg -3'
miRNA:   3'- agCGC-CGCCGC--UUCA----UGGGGCUAGuG- -5'
5580 3' -58.1 NC_001806.1 + 66422 0.67 0.76641
Target:  5'- gUGCGuGCGGUGggGcGCCCCcgcaGGUC-Cg -3'
miRNA:   3'- aGCGC-CGCCGCuuCaUGGGG----CUAGuG- -5'
5580 3' -58.1 NC_001806.1 + 20097 0.67 0.76641
Target:  5'- uUCGUGGcCGGCGccGUcugcggGCgUCGGUCGCg -3'
miRNA:   3'- -AGCGCC-GCCGCuuCA------UGgGGCUAGUG- -5'
5580 3' -58.1 NC_001806.1 + 38392 0.67 0.763623
Target:  5'- gUCGCGGCGGCucuccgccggcucgGggGgguCCUCguccaGAUCGCu -3'
miRNA:   3'- -AGCGCCGCCG--------------CuuCau-GGGG-----CUAGUG- -5'
5580 3' -58.1 NC_001806.1 + 109241 0.67 0.75708
Target:  5'- -gGCGG-GGCGGAauccuggGCCCCGggCACc -3'
miRNA:   3'- agCGCCgCCGCUUca-----UGGGGCuaGUG- -5'
5580 3' -58.1 NC_001806.1 + 99576 0.67 0.75708
Target:  5'- -gGUGGCGGCGggGgggaacgcggGCUCCG-UCGg -3'
miRNA:   3'- agCGCCGCCGCuuCa---------UGGGGCuAGUg -5'
5580 3' -58.1 NC_001806.1 + 72714 0.67 0.75708
Target:  5'- -gGCGGUGGCccuGAagGGUACCCCaccCACg -3'
miRNA:   3'- agCGCCGCCG---CU--UCAUGGGGcuaGUG- -5'
5580 3' -58.1 NC_001806.1 + 56773 0.68 0.747643
Target:  5'- aCGCGGCGGUGGucgGGgcaaGCCCUGGaaaaGCa -3'
miRNA:   3'- aGCGCCGCCGCU---UCa---UGGGGCUag--UG- -5'
5580 3' -58.1 NC_001806.1 + 77870 0.68 0.738109
Target:  5'- aUGCGGCGGCcGAGcucuacgucGCCCUcGUCGCg -3'
miRNA:   3'- aGCGCCGCCGcUUCa--------UGGGGcUAGUG- -5'
5580 3' -58.1 NC_001806.1 + 30865 0.68 0.738109
Target:  5'- cCGCGGgGGCcgagGAAGUguGCCCgGAagACg -3'
miRNA:   3'- aGCGCCgCCG----CUUCA--UGGGgCUagUG- -5'
5580 3' -58.1 NC_001806.1 + 3090 0.68 0.738109
Target:  5'- cCGCGGCGGCGgcG-GCCgCGGagcUCGg -3'
miRNA:   3'- aGCGCCGCCGCuuCaUGGgGCU---AGUg -5'
5580 3' -58.1 NC_001806.1 + 33526 0.68 0.735231
Target:  5'- cUGCGGCcuaauggauuuccgGGCGcGGUGCCCCuGUCuGCa -3'
miRNA:   3'- aGCGCCG--------------CCGCuUCAUGGGGcUAG-UG- -5'
5580 3' -58.1 NC_001806.1 + 144529 0.68 0.728486
Target:  5'- -aGCGGgGGCGcg--GCCgugCCGAUCGCg -3'
miRNA:   3'- agCGCCgCCGCuucaUGG---GGCUAGUG- -5'
5580 3' -58.1 NC_001806.1 + 118896 0.68 0.728486
Target:  5'- aUGCGGUGGgGGAGcuucugGCCCCcGUCGu -3'
miRNA:   3'- aGCGCCGCCgCUUCa-----UGGGGcUAGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.