miRNA display CGI


Results 21 - 40 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5580 3' -58.1 NC_001806.1 + 78670 0.66 0.828031
Target:  5'- gUGCuGGCGGC--AGUGCuCCUGggCGCg -3'
miRNA:   3'- aGCG-CCGCCGcuUCAUG-GGGCuaGUG- -5'
5580 3' -58.1 NC_001806.1 + 147745 0.66 0.828031
Target:  5'- gCGCGGgGGCGcgcGggUCCCGA-CGCg -3'
miRNA:   3'- aGCGCCgCCGCuu-CauGGGGCUaGUG- -5'
5580 3' -58.1 NC_001806.1 + 24871 0.66 0.828031
Target:  5'- -gGCGGCGGCGggG-GCCgUGGa--- -3'
miRNA:   3'- agCGCCGCCGCuuCaUGGgGCUagug -5'
5580 3' -58.1 NC_001806.1 + 37626 0.66 0.827204
Target:  5'- uUCGCGGCGG-GAaacGGcUGCCCCccaaaggGGUCGu -3'
miRNA:   3'- -AGCGCCGCCgCU---UC-AUGGGG-------CUAGUg -5'
5580 3' -58.1 NC_001806.1 + 49312 0.66 0.819681
Target:  5'- aCGaCGGCGcGCGucGgaaGCCCCGccCACa -3'
miRNA:   3'- aGC-GCCGC-CGCuuCa--UGGGGCuaGUG- -5'
5580 3' -58.1 NC_001806.1 + 144833 0.66 0.811167
Target:  5'- cCGCGGCGGUccGG-GCCCCG-UC-Cg -3'
miRNA:   3'- aGCGCCGCCGcuUCaUGGGGCuAGuG- -5'
5580 3' -58.1 NC_001806.1 + 151105 0.66 0.811167
Target:  5'- gUCGCGGgGGUcgcGggGgGCUCCGG-CGCc -3'
miRNA:   3'- -AGCGCCgCCG---CuuCaUGGGGCUaGUG- -5'
5580 3' -58.1 NC_001806.1 + 130841 0.66 0.811167
Target:  5'- aCuCGGCGGCcgggggaucugGGAGgaccuucgGCCCCGAUgACg -3'
miRNA:   3'- aGcGCCGCCG-----------CUUCa-------UGGGGCUAgUG- -5'
5580 3' -58.1 NC_001806.1 + 23213 0.66 0.811167
Target:  5'- -gGCGGCGGCGGccagcgcaccGGacGCCgCCGA-CGCg -3'
miRNA:   3'- agCGCCGCCGCU----------UCa-UGG-GGCUaGUG- -5'
5580 3' -58.1 NC_001806.1 + 13284 0.66 0.811167
Target:  5'- aCGCGGgGGCGugcaucAGGaACCCCaGGUUAUc -3'
miRNA:   3'- aGCGCCgCCGC------UUCaUGGGG-CUAGUG- -5'
5580 3' -58.1 NC_001806.1 + 131468 0.67 0.802496
Target:  5'- aC-CGGCGGCGcuGUugCCgGAaCGCa -3'
miRNA:   3'- aGcGCCGCCGCuuCAugGGgCUaGUG- -5'
5580 3' -58.1 NC_001806.1 + 113089 0.67 0.802496
Target:  5'- aCGUGGCGGCcccGGccgGCCCCGc-CGCa -3'
miRNA:   3'- aGCGCCGCCGcu-UCa--UGGGGCuaGUG- -5'
5580 3' -58.1 NC_001806.1 + 95319 0.67 0.793677
Target:  5'- gCGCccaagGGCGGCGcGG-GCCCCGAcgACg -3'
miRNA:   3'- aGCG-----CCGCCGCuUCaUGGGGCUagUG- -5'
5580 3' -58.1 NC_001806.1 + 70485 0.67 0.793677
Target:  5'- aUGCGGUGGuCGggGacACgCCCGAcCGCc -3'
miRNA:   3'- aGCGCCGCC-GCuuCa-UG-GGGCUaGUG- -5'
5580 3' -58.1 NC_001806.1 + 1445 0.67 0.793677
Target:  5'- gCGcCGGCGGC-AGGgcCCCCGGgccgucgucgUCGCc -3'
miRNA:   3'- aGC-GCCGCCGcUUCauGGGGCU----------AGUG- -5'
5580 3' -58.1 NC_001806.1 + 140023 0.67 0.784717
Target:  5'- cUCGC-GCGGCGAAaGcGCCCgGAgcgcCACg -3'
miRNA:   3'- -AGCGcCGCCGCUU-CaUGGGgCUa---GUG- -5'
5580 3' -58.1 NC_001806.1 + 90235 0.67 0.779277
Target:  5'- aCGCaGCGGCGAuuccgacgucgccguGGcGCCCCuGGUCGu -3'
miRNA:   3'- aGCGcCGCCGCU---------------UCaUGGGG-CUAGUg -5'
5580 3' -58.1 NC_001806.1 + 123842 0.67 0.775625
Target:  5'- cCGCGaGCGGCuucgcgcgGGAcUAUCCCGAUgGCg -3'
miRNA:   3'- aGCGC-CGCCG--------CUUcAUGGGGCUAgUG- -5'
5580 3' -58.1 NC_001806.1 + 95595 0.67 0.775625
Target:  5'- cUGCGGgucagcguccaCGGCGAGGUgcuGCCCgCGAcguUCGCc -3'
miRNA:   3'- aGCGCC-----------GCCGCUUCA---UGGG-GCU---AGUG- -5'
5580 3' -58.1 NC_001806.1 + 80027 0.67 0.775625
Target:  5'- cCGCaGCGGCGccuuacgcGCCCCGcuGUCGCg -3'
miRNA:   3'- aGCGcCGCCGCuuca----UGGGGC--UAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.