miRNA display CGI


Results 21 - 40 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5580 3' -58.1 NC_001806.1 + 21216 0.71 0.539791
Target:  5'- gCGCGGagacggaggagGGCGggGacgACCCCGAcCACg -3'
miRNA:   3'- aGCGCCg----------CCGCuuCa--UGGGGCUaGUG- -5'
5580 3' -58.1 NC_001806.1 + 21868 0.75 0.346649
Target:  5'- -gGCGGCGGCGAGG-ACCCC---CGCg -3'
miRNA:   3'- agCGCCGCCGCUUCaUGGGGcuaGUG- -5'
5580 3' -58.1 NC_001806.1 + 21924 0.69 0.688287
Target:  5'- gCGCGGCGGUGGccgGCCgCGAcgccacgggcccuUCACg -3'
miRNA:   3'- aGCGCCGCCGCUucaUGGgGCU-------------AGUG- -5'
5580 3' -58.1 NC_001806.1 + 22556 0.73 0.446033
Target:  5'- aCGCGGCGcugacgggggccGCGggGaGCCCCGG-CGCc -3'
miRNA:   3'- aGCGCCGC------------CGCuuCaUGGGGCUaGUG- -5'
5580 3' -58.1 NC_001806.1 + 22721 0.69 0.679342
Target:  5'- cCGCgGGgGGCGAcg-ACCCCGA-CGCc -3'
miRNA:   3'- aGCG-CCgCCGCUucaUGGGGCUaGUG- -5'
5580 3' -58.1 NC_001806.1 + 23213 0.66 0.811167
Target:  5'- -gGCGGCGGCGGccagcgcaccGGacGCCgCCGA-CGCg -3'
miRNA:   3'- agCGCCGCCGCU----------UCa-UGG-GGCUaGUG- -5'
5580 3' -58.1 NC_001806.1 + 23328 0.66 0.842624
Target:  5'- -gGCGGCGGCccgcgacCCCCGAagACg -3'
miRNA:   3'- agCGCCGCCGcuucau-GGGGCUagUG- -5'
5580 3' -58.1 NC_001806.1 + 24368 0.66 0.833775
Target:  5'- uUCGCGcGCGuggaggccgcgcacGCGcgccuGUACCCCGA-CGCg -3'
miRNA:   3'- -AGCGC-CGC--------------CGCuu---CAUGGGGCUaGUG- -5'
5580 3' -58.1 NC_001806.1 + 24541 0.67 0.76641
Target:  5'- -gGCGGCGGCcucGggG-ACCaCCGA-CGCc -3'
miRNA:   3'- agCGCCGCCG---CuuCaUGG-GGCUaGUG- -5'
5580 3' -58.1 NC_001806.1 + 24871 0.66 0.828031
Target:  5'- -gGCGGCGGCGggG-GCCgUGGa--- -3'
miRNA:   3'- agCGCCGCCGCuuCaUGGgGCUagug -5'
5580 3' -58.1 NC_001806.1 + 29930 0.7 0.619215
Target:  5'- -aGCaGCGGCGggGcgGCuCCCGccaGUCGCg -3'
miRNA:   3'- agCGcCGCCGCuuCa-UG-GGGC---UAGUG- -5'
5580 3' -58.1 NC_001806.1 + 30314 0.72 0.491883
Target:  5'- cCGCGGaCGcGCGccguGUGCCCCaGUCGCa -3'
miRNA:   3'- aGCGCC-GC-CGCuu--CAUGGGGcUAGUG- -5'
5580 3' -58.1 NC_001806.1 + 30865 0.68 0.738109
Target:  5'- cCGCGGgGGCcgagGAAGUguGCCCgGAagACg -3'
miRNA:   3'- aGCGCCgCCG----CUUCA--UGGGgCUagUG- -5'
5580 3' -58.1 NC_001806.1 + 33526 0.68 0.735231
Target:  5'- cUGCGGCcuaauggauuuccgGGCGcGGUGCCCCuGUCuGCa -3'
miRNA:   3'- aGCGCCG--------------CCGCuUCAUGGGGcUAG-UG- -5'
5580 3' -58.1 NC_001806.1 + 37312 0.67 0.76641
Target:  5'- -gGCGcGUGGCGAGGUuauccagcacaGCCgCGGUCGu -3'
miRNA:   3'- agCGC-CGCCGCUUCA-----------UGGgGCUAGUg -5'
5580 3' -58.1 NC_001806.1 + 37626 0.66 0.827204
Target:  5'- uUCGCGGCGG-GAaacGGcUGCCCCccaaaggGGUCGu -3'
miRNA:   3'- -AGCGCCGCCgCU---UC-AUGGGG-------CUAGUg -5'
5580 3' -58.1 NC_001806.1 + 38289 0.67 0.76641
Target:  5'- -gGCGaGCGGCGucGAGUaucgGCUCCGGUC-Cg -3'
miRNA:   3'- agCGC-CGCCGC--UUCA----UGGGGCUAGuG- -5'
5580 3' -58.1 NC_001806.1 + 38392 0.67 0.763623
Target:  5'- gUCGCGGCGGCucuccgccggcucgGggGgguCCUCguccaGAUCGCu -3'
miRNA:   3'- -AGCGCCGCCG--------------CuuCau-GGGG-----CUAGUG- -5'
5580 3' -58.1 NC_001806.1 + 39190 0.66 0.831324
Target:  5'- -gGCGGCGGCcuugucugcguucuuGggGgccggGCCCCGc-CGCa -3'
miRNA:   3'- agCGCCGCCG---------------CuuCa----UGGGGCuaGUG- -5'
5580 3' -58.1 NC_001806.1 + 41826 0.77 0.258046
Target:  5'- aCGCGGgGGCGGGcGUcaggGCCCCGggCGCg -3'
miRNA:   3'- aGCGCCgCCGCUU-CA----UGGGGCuaGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.