miRNA display CGI


Results 21 - 40 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5580 3' -58.1 NC_001806.1 + 100396 0.71 0.559405
Target:  5'- gCGCGGgGGcCGggGUG-CCCGAUguCg -3'
miRNA:   3'- aGCGCCgCC-GCuuCAUgGGGCUAguG- -5'
5580 3' -58.1 NC_001806.1 + 3130 0.71 0.579214
Target:  5'- cCGCGGCaGcGCGggGcccaggGCCCCGGcgaccaggcUCACg -3'
miRNA:   3'- aGCGCCG-C-CGCuuCa-----UGGGGCU---------AGUG- -5'
5580 3' -58.1 NC_001806.1 + 42738 0.7 0.589176
Target:  5'- -gGUGGCGGCGAuGUGgUCCGGUUguaGCg -3'
miRNA:   3'- agCGCCGCCGCUuCAUgGGGCUAG---UG- -5'
5580 3' -58.1 NC_001806.1 + 29930 0.7 0.619215
Target:  5'- -aGCaGCGGCGggGcgGCuCCCGccaGUCGCg -3'
miRNA:   3'- agCGcCGCCGCuuCa-UG-GGGC---UAGUG- -5'
5580 3' -58.1 NC_001806.1 + 134979 0.7 0.628252
Target:  5'- gUCGCGGCGGCcaucccGGUgcccgaugcccccGCCCUGGUCcgGCg -3'
miRNA:   3'- -AGCGCCGCCGcu----UCA-------------UGGGGCUAG--UG- -5'
5580 3' -58.1 NC_001806.1 + 51794 0.7 0.629256
Target:  5'- cCGUGGCGGCcAAGUACgCCGc-CACc -3'
miRNA:   3'- aGCGCCGCCGcUUCAUGgGGCuaGUG- -5'
5580 3' -58.1 NC_001806.1 + 148115 0.69 0.645324
Target:  5'- cCGCGGcCGGCuGggGggcugcgugagacGCCCCGcccGUCACg -3'
miRNA:   3'- aGCGCC-GCCG-CuuCa------------UGGGGC---UAGUG- -5'
5580 3' -58.1 NC_001806.1 + 4907 0.69 0.649338
Target:  5'- gUCGCGGCGaGaCGgcGU-CCCCGGcguccUCGCc -3'
miRNA:   3'- -AGCGCCGC-C-GCuuCAuGGGGCU-----AGUG- -5'
5580 3' -58.1 NC_001806.1 + 96453 0.69 0.659363
Target:  5'- gCGuCGGCGGCuccGAGUucCCCCGG-CACg -3'
miRNA:   3'- aGC-GCCGCCGc--UUCAu-GGGGCUaGUG- -5'
5580 3' -58.1 NC_001806.1 + 3568 0.69 0.659363
Target:  5'- cCGCcccagGGCGGCGAGGauCCCCGcggCGCc -3'
miRNA:   3'- aGCG-----CCGCCGCUUCauGGGGCua-GUG- -5'
5580 3' -58.1 NC_001806.1 + 22721 0.69 0.679342
Target:  5'- cCGCgGGgGGCGAcg-ACCCCGA-CGCc -3'
miRNA:   3'- aGCG-CCgCCGCUucaUGGGGCUaGUG- -5'
5580 3' -58.1 NC_001806.1 + 104188 0.69 0.679342
Target:  5'- gUCGgGGCGGCGcGGU-CCCaGGUcCACu -3'
miRNA:   3'- -AGCgCCGCCGCuUCAuGGGgCUA-GUG- -5'
5580 3' -58.1 NC_001806.1 + 2813 0.69 0.679342
Target:  5'- -gGCGGgGGCGGGcucggGCCCCGGggGCg -3'
miRNA:   3'- agCGCCgCCGCUUca---UGGGGCUagUG- -5'
5580 3' -58.1 NC_001806.1 + 21924 0.69 0.688287
Target:  5'- gCGCGGCGGUGGccgGCCgCGAcgccacgggcccuUCACg -3'
miRNA:   3'- aGCGCCGCCGCUucaUGGgGCU-------------AGUG- -5'
5580 3' -58.1 NC_001806.1 + 102475 0.69 0.693242
Target:  5'- gUCGCGGUaGCGGuacuGUGgccggccgcccucggUCCCGAUCACc -3'
miRNA:   3'- -AGCGCCGcCGCUu---CAU---------------GGGGCUAGUG- -5'
5580 3' -58.1 NC_001806.1 + 146694 0.69 0.698184
Target:  5'- cUGCGGaaguccaGGCGcccacuaGGGUGCCCUGGUCGa -3'
miRNA:   3'- aGCGCCg------CCGC-------UUCAUGGGGCUAGUg -5'
5580 3' -58.1 NC_001806.1 + 3308 0.69 0.699171
Target:  5'- -gGCGGCGGCGggGaagcgggGCCCgCGGg--- -3'
miRNA:   3'- agCGCCGCCGCuuCa------UGGG-GCUagug -5'
5580 3' -58.1 NC_001806.1 + 4734 0.68 0.718783
Target:  5'- uUCGCGGCcccgGGCcGGGg--CCCGGUCGCc -3'
miRNA:   3'- -AGCGCCG----CCGcUUCaugGGGCUAGUG- -5'
5580 3' -58.1 NC_001806.1 + 82741 0.68 0.722673
Target:  5'- -gGCGGCGGCGucGUcgggcgcuuuuauagGCCCgGcgUACg -3'
miRNA:   3'- agCGCCGCCGCuuCA---------------UGGGgCuaGUG- -5'
5580 3' -58.1 NC_001806.1 + 118896 0.68 0.728486
Target:  5'- aUGCGGUGGgGGAGcuucugGCCCCcGUCGu -3'
miRNA:   3'- aGCGCCGCCgCUUCa-----UGGGGcUAGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.