miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5580 3' -58.1 NC_001806.1 + 123139 1.1 0.001621
Target:  5'- gUCGCGGCGGCGAAGUACCCCGAUCACg -3'
miRNA:   3'- -AGCGCCGCCGCUUCAUGGGGCUAGUG- -5'
5580 3' -58.1 NC_001806.1 + 151450 0.78 0.234778
Target:  5'- -gGCGGCGGCGggGcgGCCgCGggCGCg -3'
miRNA:   3'- agCGCCGCCGCuuCa-UGGgGCuaGUG- -5'
5580 3' -58.1 NC_001806.1 + 41826 0.77 0.258046
Target:  5'- aCGCGGgGGCGGGcGUcaggGCCCCGggCGCg -3'
miRNA:   3'- aGCGCCgCCGCUU-CA----UGGGGCuaGUG- -5'
5580 3' -58.1 NC_001806.1 + 21868 0.75 0.346649
Target:  5'- -gGCGGCGGCGAGG-ACCCC---CGCg -3'
miRNA:   3'- agCGCCGCCGCUUCaUGGGGcuaGUG- -5'
5580 3' -58.1 NC_001806.1 + 126135 0.75 0.354301
Target:  5'- aCGaCGGCGGCGAGGccgGCgCCGA-CACg -3'
miRNA:   3'- aGC-GCCGCCGCUUCa--UGgGGCUaGUG- -5'
5580 3' -58.1 NC_001806.1 + 95074 0.74 0.377964
Target:  5'- -gGCGGCgGGCGGAGcAUUUCGAUCGCg -3'
miRNA:   3'- agCGCCG-CCGCUUCaUGGGGCUAGUG- -5'
5580 3' -58.1 NC_001806.1 + 52878 0.74 0.402667
Target:  5'- cCGcCGGCGGCGAcGUGCCCCuccucguccgGcgCGCg -3'
miRNA:   3'- aGC-GCCGCCGCUuCAUGGGG----------CuaGUG- -5'
5580 3' -58.1 NC_001806.1 + 18129 0.74 0.411126
Target:  5'- aUCGCcguucGCGGCGAAcgGCCCCGAcuuccUCACa -3'
miRNA:   3'- -AGCGc----CGCCGCUUcaUGGGGCU-----AGUG- -5'
5580 3' -58.1 NC_001806.1 + 58488 0.74 0.419694
Target:  5'- aCGUGGUgGGCGuGGcacuaucgGCCCCGGUCGCg -3'
miRNA:   3'- aGCGCCG-CCGCuUCa-------UGGGGCUAGUG- -5'
5580 3' -58.1 NC_001806.1 + 22556 0.73 0.446033
Target:  5'- aCGCGGCGcugacgggggccGCGggGaGCCCCGG-CGCc -3'
miRNA:   3'- aGCGCCGC------------CGCuuCaUGGGGCUaGUG- -5'
5580 3' -58.1 NC_001806.1 + 147695 0.73 0.464096
Target:  5'- gCGCGGgGGCGG---GCCCCGGagGCg -3'
miRNA:   3'- aGCGCCgCCGCUucaUGGGGCUagUG- -5'
5580 3' -58.1 NC_001806.1 + 78390 0.72 0.473269
Target:  5'- -gGCGGCGGUGAGcGU-CCUCGggCGCa -3'
miRNA:   3'- agCGCCGCCGCUU-CAuGGGGCuaGUG- -5'
5580 3' -58.1 NC_001806.1 + 30314 0.72 0.491883
Target:  5'- cCGCGGaCGcGCGccguGUGCCCCaGUCGCa -3'
miRNA:   3'- aGCGCC-GC-CGCuu--CAUGGGGcUAGUG- -5'
5580 3' -58.1 NC_001806.1 + 113029 0.72 0.499423
Target:  5'- aCGCGGCGGuCGggGgccuuaaccgcgACCCCG-UCGa -3'
miRNA:   3'- aGCGCCGCC-GCuuCa-----------UGGGGCuAGUg -5'
5580 3' -58.1 NC_001806.1 + 112428 0.72 0.500369
Target:  5'- gCGCgGGCGGCcggucgacGggGUgcucgucaccaccGCCCCGAUCAa -3'
miRNA:   3'- aGCG-CCGCCG--------CuuCA-------------UGGGGCUAGUg -5'
5580 3' -58.1 NC_001806.1 + 83050 0.72 0.501317
Target:  5'- gUCGCGGUGuGCGAagAGUcCCCCGGcaGCa -3'
miRNA:   3'- -AGCGCCGC-CGCU--UCAuGGGGCUagUG- -5'
5580 3' -58.1 NC_001806.1 + 2509 0.72 0.510828
Target:  5'- aCGCggccugGGCGGCGggGgcggGCCCgGcgCACc -3'
miRNA:   3'- aGCG------CCGCCGCuuCa---UGGGgCuaGUG- -5'
5580 3' -58.1 NC_001806.1 + 151559 0.72 0.520414
Target:  5'- -gGgGGCGGCGggG-GCCgCGAUgGCg -3'
miRNA:   3'- agCgCCGCCGCuuCaUGGgGCUAgUG- -5'
5580 3' -58.1 NC_001806.1 + 3634 0.71 0.539791
Target:  5'- -gGCGGCGGCGAcggcGGcgACCCCcucGUCAUc -3'
miRNA:   3'- agCGCCGCCGCU----UCa-UGGGGc--UAGUG- -5'
5580 3' -58.1 NC_001806.1 + 21216 0.71 0.539791
Target:  5'- gCGCGGagacggaggagGGCGggGacgACCCCGAcCACg -3'
miRNA:   3'- aGCGCCg----------CCGCuuCa--UGGGGCUaGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.