Results 1 - 20 of 100 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5580 | 3' | -58.1 | NC_001806.1 | + | 62307 | 0.66 | 0.855096 |
Target: 5'- -aGUGGCGGCGGgccuggcgcggagggGGUuUgUCGGUCACa -3' miRNA: 3'- agCGCCGCCGCU---------------UCAuGgGGCUAGUG- -5' |
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5580 | 3' | -58.1 | NC_001806.1 | + | 30314 | 0.72 | 0.491883 |
Target: 5'- cCGCGGaCGcGCGccguGUGCCCCaGUCGCa -3' miRNA: 3'- aGCGCC-GC-CGCuu--CAUGGGGcUAGUG- -5' |
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5580 | 3' | -58.1 | NC_001806.1 | + | 113029 | 0.72 | 0.499423 |
Target: 5'- aCGCGGCGGuCGggGgccuuaaccgcgACCCCG-UCGa -3' miRNA: 3'- aGCGCCGCC-GCuuCa-----------UGGGGCuAGUg -5' |
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5580 | 3' | -58.1 | NC_001806.1 | + | 112428 | 0.72 | 0.500369 |
Target: 5'- gCGCgGGCGGCcggucgacGggGUgcucgucaccaccGCCCCGAUCAa -3' miRNA: 3'- aGCG-CCGCCG--------CuuCA-------------UGGGGCUAGUg -5' |
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5580 | 3' | -58.1 | NC_001806.1 | + | 83050 | 0.72 | 0.501317 |
Target: 5'- gUCGCGGUGuGCGAagAGUcCCCCGGcaGCa -3' miRNA: 3'- -AGCGCCGC-CGCU--UCAuGGGGCUagUG- -5' |
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5580 | 3' | -58.1 | NC_001806.1 | + | 2509 | 0.72 | 0.510828 |
Target: 5'- aCGCggccugGGCGGCGggGgcggGCCCgGcgCACc -3' miRNA: 3'- aGCG------CCGCCGCuuCa---UGGGgCuaGUG- -5' |
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5580 | 3' | -58.1 | NC_001806.1 | + | 151559 | 0.72 | 0.520414 |
Target: 5'- -gGgGGCGGCGggG-GCCgCGAUgGCg -3' miRNA: 3'- agCgCCGCCGCuuCaUGGgGCUAgUG- -5' |
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5580 | 3' | -58.1 | NC_001806.1 | + | 3634 | 0.71 | 0.539791 |
Target: 5'- -gGCGGCGGCGAcggcGGcgACCCCcucGUCAUc -3' miRNA: 3'- agCGCCGCCGCU----UCa-UGGGGc--UAGUG- -5' |
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5580 | 3' | -58.1 | NC_001806.1 | + | 21216 | 0.71 | 0.539791 |
Target: 5'- gCGCGGagacggaggagGGCGggGacgACCCCGAcCACg -3' miRNA: 3'- aGCGCCg----------CCGCuuCa--UGGGGCUaGUG- -5' |
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5580 | 3' | -58.1 | NC_001806.1 | + | 78390 | 0.72 | 0.473269 |
Target: 5'- -gGCGGCGGUGAGcGU-CCUCGggCGCa -3' miRNA: 3'- agCGCCGCCGCUU-CAuGGGGCuaGUG- -5' |
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5580 | 3' | -58.1 | NC_001806.1 | + | 147695 | 0.73 | 0.464096 |
Target: 5'- gCGCGGgGGCGG---GCCCCGGagGCg -3' miRNA: 3'- aGCGCCgCCGCUucaUGGGGCUagUG- -5' |
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5580 | 3' | -58.1 | NC_001806.1 | + | 22556 | 0.73 | 0.446033 |
Target: 5'- aCGCGGCGcugacgggggccGCGggGaGCCCCGG-CGCc -3' miRNA: 3'- aGCGCCGC------------CGCuuCaUGGGGCUaGUG- -5' |
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5580 | 3' | -58.1 | NC_001806.1 | + | 151450 | 0.78 | 0.234778 |
Target: 5'- -gGCGGCGGCGggGcgGCCgCGggCGCg -3' miRNA: 3'- agCGCCGCCGCuuCa-UGGgGCuaGUG- -5' |
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5580 | 3' | -58.1 | NC_001806.1 | + | 41826 | 0.77 | 0.258046 |
Target: 5'- aCGCGGgGGCGGGcGUcaggGCCCCGggCGCg -3' miRNA: 3'- aGCGCCgCCGCUU-CA----UGGGGCuaGUG- -5' |
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5580 | 3' | -58.1 | NC_001806.1 | + | 21868 | 0.75 | 0.346649 |
Target: 5'- -gGCGGCGGCGAGG-ACCCC---CGCg -3' miRNA: 3'- agCGCCGCCGCUUCaUGGGGcuaGUG- -5' |
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5580 | 3' | -58.1 | NC_001806.1 | + | 126135 | 0.75 | 0.354301 |
Target: 5'- aCGaCGGCGGCGAGGccgGCgCCGA-CACg -3' miRNA: 3'- aGC-GCCGCCGCUUCa--UGgGGCUaGUG- -5' |
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5580 | 3' | -58.1 | NC_001806.1 | + | 95074 | 0.74 | 0.377964 |
Target: 5'- -gGCGGCgGGCGGAGcAUUUCGAUCGCg -3' miRNA: 3'- agCGCCG-CCGCUUCaUGGGGCUAGUG- -5' |
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5580 | 3' | -58.1 | NC_001806.1 | + | 52878 | 0.74 | 0.402667 |
Target: 5'- cCGcCGGCGGCGAcGUGCCCCuccucguccgGcgCGCg -3' miRNA: 3'- aGC-GCCGCCGCUuCAUGGGG----------CuaGUG- -5' |
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5580 | 3' | -58.1 | NC_001806.1 | + | 18129 | 0.74 | 0.411126 |
Target: 5'- aUCGCcguucGCGGCGAAcgGCCCCGAcuuccUCACa -3' miRNA: 3'- -AGCGc----CGCCGCUUcaUGGGGCU-----AGUG- -5' |
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5580 | 3' | -58.1 | NC_001806.1 | + | 58488 | 0.74 | 0.419694 |
Target: 5'- aCGUGGUgGGCGuGGcacuaucgGCCCCGGUCGCg -3' miRNA: 3'- aGCGCCG-CCGCuUCa-------UGGGGCUAGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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