miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5580 3' -58.1 NC_001806.1 + 132789 0.66 0.828031
Target:  5'- -gGCGGUGGCGcGGUggcAUCCCGc-CACu -3'
miRNA:   3'- agCGCCGCCGCuUCA---UGGGGCuaGUG- -5'
5580 3' -58.1 NC_001806.1 + 86402 0.66 0.83621
Target:  5'- aCGCGGCGGCc----GCUCCGGagACg -3'
miRNA:   3'- aGCGCCGCCGcuucaUGGGGCUagUG- -5'
5580 3' -58.1 NC_001806.1 + 65623 0.66 0.83621
Target:  5'- aCGUGGUGGCcgugggcgaGAGGgGCCCCGGcgGCc -3'
miRNA:   3'- aGCGCCGCCG---------CUUCaUGGGGCUagUG- -5'
5580 3' -58.1 NC_001806.1 + 147745 0.66 0.828031
Target:  5'- gCGCGGgGGCGcgcGggUCCCGA-CGCg -3'
miRNA:   3'- aGCGCCgCCGCuu-CauGGGGCUaGUG- -5'
5580 3' -58.1 NC_001806.1 + 23213 0.66 0.811167
Target:  5'- -gGCGGCGGCGGccagcgcaccGGacGCCgCCGA-CGCg -3'
miRNA:   3'- agCGCCGCCGCU----------UCa-UGG-GGCUaGUG- -5'
5580 3' -58.1 NC_001806.1 + 134452 0.66 0.831324
Target:  5'- aCGCGuucgaauggggacguGCGGCGAcccgcgACCCCGAgcCACg -3'
miRNA:   3'- aGCGC---------------CGCCGCUuca---UGGGGCUa-GUG- -5'
5580 3' -58.1 NC_001806.1 + 23328 0.66 0.842624
Target:  5'- -gGCGGCGGCccgcgacCCCCGAagACg -3'
miRNA:   3'- agCGCCGCCGcuucau-GGGGCUagUG- -5'
5580 3' -58.1 NC_001806.1 + 4409 0.66 0.83621
Target:  5'- gCGCGGCcucggagaGGgGggGUGgCCCGggCGg -3'
miRNA:   3'- aGCGCCG--------CCgCuuCAUgGGGCuaGUg -5'
5580 3' -58.1 NC_001806.1 + 39190 0.66 0.831324
Target:  5'- -gGCGGCGGCcuugucugcguucuuGggGgccggGCCCCGc-CGCa -3'
miRNA:   3'- agCGCCGCCG---------------CuuCa----UGGGGCuaGUG- -5'
5580 3' -58.1 NC_001806.1 + 130841 0.66 0.811167
Target:  5'- aCuCGGCGGCcgggggaucugGGAGgaccuucgGCCCCGAUgACg -3'
miRNA:   3'- aGcGCCGCCG-----------CUUCa-------UGGGGCUAgUG- -5'
5580 3' -58.1 NC_001806.1 + 78670 0.66 0.828031
Target:  5'- gUGCuGGCGGC--AGUGCuCCUGggCGCg -3'
miRNA:   3'- aGCG-CCGCCGcuUCAUG-GGGCuaGUG- -5'
5580 3' -58.1 NC_001806.1 + 37626 0.66 0.827204
Target:  5'- uUCGCGGCGG-GAaacGGcUGCCCCccaaaggGGUCGu -3'
miRNA:   3'- -AGCGCCGCCgCU---UC-AUGGGG-------CUAGUg -5'
5580 3' -58.1 NC_001806.1 + 132148 0.66 0.828031
Target:  5'- -gGCGGCGcGCGuugccGAGcAUCCCGAcgCGCg -3'
miRNA:   3'- agCGCCGC-CGC-----UUCaUGGGGCUa-GUG- -5'
5580 3' -58.1 NC_001806.1 + 13284 0.66 0.811167
Target:  5'- aCGCGGgGGCGugcaucAGGaACCCCaGGUUAUc -3'
miRNA:   3'- aGCGCCgCCGC------UUCaUGGGG-CUAGUG- -5'
5580 3' -58.1 NC_001806.1 + 24871 0.66 0.828031
Target:  5'- -gGCGGCGGCGggG-GCCgUGGa--- -3'
miRNA:   3'- agCGCCGCCGCuuCaUGGgGCUagug -5'
5580 3' -58.1 NC_001806.1 + 151105 0.66 0.811167
Target:  5'- gUCGCGGgGGUcgcGggGgGCUCCGG-CGCc -3'
miRNA:   3'- -AGCGCCgCCG---CuuCaUGGGGCUaGUG- -5'
5580 3' -58.1 NC_001806.1 + 62307 0.66 0.855096
Target:  5'- -aGUGGCGGCGGgccuggcgcggagggGGUuUgUCGGUCACa -3'
miRNA:   3'- agCGCCGCCGCU---------------UCAuGgGGCUAGUG- -5'
5580 3' -58.1 NC_001806.1 + 49312 0.66 0.819681
Target:  5'- aCGaCGGCGcGCGucGgaaGCCCCGccCACa -3'
miRNA:   3'- aGC-GCCGC-CGCuuCa--UGGGGCuaGUG- -5'
5580 3' -58.1 NC_001806.1 + 24368 0.66 0.833775
Target:  5'- uUCGCGcGCGuggaggccgcgcacGCGcgccuGUACCCCGA-CGCg -3'
miRNA:   3'- -AGCGC-CGC--------------CGCuu---CAUGGGGCUaGUG- -5'
5580 3' -58.1 NC_001806.1 + 6560 0.66 0.84421
Target:  5'- aCGCGGgGGCGGAGgagggggcucACCCgCGuUCGu -3'
miRNA:   3'- aGCGCCgCCGCUUCa---------UGGG-GCuAGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.