miRNA display CGI


Results 21 - 40 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5580 3' -58.1 NC_001806.1 + 62307 0.66 0.855096
Target:  5'- -aGUGGCGGCGGgccuggcgcggagggGGUuUgUCGGUCACa -3'
miRNA:   3'- agCGCCGCCGCU---------------UCAuGgGGCUAGUG- -5'
5580 3' -58.1 NC_001806.1 + 2785 0.66 0.852024
Target:  5'- cCGCGGCGGCccGggGcGCCgCGggCu- -3'
miRNA:   3'- aGCGCCGCCG--CuuCaUGGgGCuaGug -5'
5580 3' -58.1 NC_001806.1 + 77271 0.66 0.852024
Target:  5'- aCGCGGUGGcCGggGaccugGCCCCa----- -3'
miRNA:   3'- aGCGCCGCC-GCuuCa----UGGGGcuagug -5'
5580 3' -58.1 NC_001806.1 + 141433 0.66 0.852024
Target:  5'- gCGCGGCcaaccGGCGGAuaACUCCGccCACg -3'
miRNA:   3'- aGCGCCG-----CCGCUUcaUGGGGCuaGUG- -5'
5580 3' -58.1 NC_001806.1 + 78670 0.66 0.828031
Target:  5'- gUGCuGGCGGC--AGUGCuCCUGggCGCg -3'
miRNA:   3'- aGCG-CCGCCGcuUCAUG-GGGCuaGUG- -5'
5580 3' -58.1 NC_001806.1 + 132148 0.66 0.828031
Target:  5'- -gGCGGCGcGCGuugccGAGcAUCCCGAcgCGCg -3'
miRNA:   3'- agCGCCGC-CGC-----UUCaUGGGGCUa-GUG- -5'
5580 3' -58.1 NC_001806.1 + 23328 0.66 0.842624
Target:  5'- -gGCGGCGGCccgcgacCCCCGAagACg -3'
miRNA:   3'- agCGCCGCCGcuucau-GGGGCUagUG- -5'
5580 3' -58.1 NC_001806.1 + 24368 0.66 0.833775
Target:  5'- uUCGCGcGCGuggaggccgcgcacGCGcgccuGUACCCCGA-CGCg -3'
miRNA:   3'- -AGCGC-CGC--------------CGCuu---CAUGGGGCUaGUG- -5'
5580 3' -58.1 NC_001806.1 + 86402 0.66 0.83621
Target:  5'- aCGCGGCGGCc----GCUCCGGagACg -3'
miRNA:   3'- aGCGCCGCCGcuucaUGGGGCUagUG- -5'
5580 3' -58.1 NC_001806.1 + 10044 0.66 0.84421
Target:  5'- gCGCGGUGG-GggGUuuguucuggaacACCCCGcgUAg -3'
miRNA:   3'- aGCGCCGCCgCuuCA------------UGGGGCuaGUg -5'
5580 3' -58.1 NC_001806.1 + 72714 0.67 0.75708
Target:  5'- -gGCGGUGGCccuGAagGGUACCCCaccCACg -3'
miRNA:   3'- agCGCCGCCG---CU--UCAUGGGGcuaGUG- -5'
5580 3' -58.1 NC_001806.1 + 109241 0.67 0.75708
Target:  5'- -gGCGG-GGCGGAauccuggGCCCCGggCACc -3'
miRNA:   3'- agCGCCgCCGCUUca-----UGGGGCuaGUG- -5'
5580 3' -58.1 NC_001806.1 + 95595 0.67 0.775625
Target:  5'- cUGCGGgucagcguccaCGGCGAGGUgcuGCCCgCGAcguUCGCc -3'
miRNA:   3'- aGCGCC-----------GCCGCUUCA---UGGG-GCU---AGUG- -5'
5580 3' -58.1 NC_001806.1 + 38289 0.67 0.76641
Target:  5'- -gGCGaGCGGCGucGAGUaucgGCUCCGGUC-Cg -3'
miRNA:   3'- agCGC-CGCCGC--UUCA----UGGGGCUAGuG- -5'
5580 3' -58.1 NC_001806.1 + 90235 0.67 0.779277
Target:  5'- aCGCaGCGGCGAuuccgacgucgccguGGcGCCCCuGGUCGu -3'
miRNA:   3'- aGCGcCGCCGCU---------------UCaUGGGG-CUAGUg -5'
5580 3' -58.1 NC_001806.1 + 140023 0.67 0.784717
Target:  5'- cUCGC-GCGGCGAAaGcGCCCgGAgcgcCACg -3'
miRNA:   3'- -AGCGcCGCCGCUU-CaUGGGgCUa---GUG- -5'
5580 3' -58.1 NC_001806.1 + 1445 0.67 0.793677
Target:  5'- gCGcCGGCGGC-AGGgcCCCCGGgccgucgucgUCGCc -3'
miRNA:   3'- aGC-GCCGCCGcUUCauGGGGCU----------AGUG- -5'
5580 3' -58.1 NC_001806.1 + 56683 0.67 0.775625
Target:  5'- gUCGgGGgGGaCGggGgcccgggaACCCCgGGUCGCu -3'
miRNA:   3'- -AGCgCCgCC-GCuuCa-------UGGGG-CUAGUG- -5'
5580 3' -58.1 NC_001806.1 + 20097 0.67 0.76641
Target:  5'- uUCGUGGcCGGCGccGUcugcggGCgUCGGUCGCg -3'
miRNA:   3'- -AGCGCC-GCCGCuuCA------UGgGGCUAGUG- -5'
5580 3' -58.1 NC_001806.1 + 66422 0.67 0.76641
Target:  5'- gUGCGuGCGGUGggGcGCCCCcgcaGGUC-Cg -3'
miRNA:   3'- aGCGC-CGCCGCuuCaUGGGG----CUAGuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.