miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5580 3' -58.1 NC_001806.1 + 1445 0.67 0.793677
Target:  5'- gCGcCGGCGGC-AGGgcCCCCGGgccgucgucgUCGCc -3'
miRNA:   3'- aGC-GCCGCCGcUUCauGGGGCU----------AGUG- -5'
5580 3' -58.1 NC_001806.1 + 2509 0.72 0.510828
Target:  5'- aCGCggccugGGCGGCGggGgcggGCCCgGcgCACc -3'
miRNA:   3'- aGCG------CCGCCGCuuCa---UGGGgCuaGUG- -5'
5580 3' -58.1 NC_001806.1 + 2785 0.66 0.852024
Target:  5'- cCGCGGCGGCccGggGcGCCgCGggCu- -3'
miRNA:   3'- aGCGCCGCCG--CuuCaUGGgGCuaGug -5'
5580 3' -58.1 NC_001806.1 + 2813 0.69 0.679342
Target:  5'- -gGCGGgGGCGGGcucggGCCCCGGggGCg -3'
miRNA:   3'- agCGCCgCCGCUUca---UGGGGCUagUG- -5'
5580 3' -58.1 NC_001806.1 + 3017 0.67 0.76641
Target:  5'- gCGuCGGCGGCGuccGGUGCgCUGGcCGCc -3'
miRNA:   3'- aGC-GCCGCCGCu--UCAUGgGGCUaGUG- -5'
5580 3' -58.1 NC_001806.1 + 3090 0.68 0.738109
Target:  5'- cCGCGGCGGCGgcG-GCCgCGGagcUCGg -3'
miRNA:   3'- aGCGCCGCCGCuuCaUGGgGCU---AGUg -5'
5580 3' -58.1 NC_001806.1 + 3130 0.71 0.579214
Target:  5'- cCGCGGCaGcGCGggGcccaggGCCCCGGcgaccaggcUCACg -3'
miRNA:   3'- aGCGCCG-C-CGCuuCa-----UGGGGCU---------AGUG- -5'
5580 3' -58.1 NC_001806.1 + 3308 0.69 0.699171
Target:  5'- -gGCGGCGGCGggGaagcgggGCCCgCGGg--- -3'
miRNA:   3'- agCGCCGCCGCuuCa------UGGG-GCUagug -5'
5580 3' -58.1 NC_001806.1 + 3568 0.69 0.659363
Target:  5'- cCGCcccagGGCGGCGAGGauCCCCGcggCGCc -3'
miRNA:   3'- aGCG-----CCGCCGCUUCauGGGGCua-GUG- -5'
5580 3' -58.1 NC_001806.1 + 3634 0.71 0.539791
Target:  5'- -gGCGGCGGCGAcggcGGcgACCCCcucGUCAUc -3'
miRNA:   3'- agCGCCGCCGCU----UCa-UGGGGc--UAGUG- -5'
5580 3' -58.1 NC_001806.1 + 4409 0.66 0.83621
Target:  5'- gCGCGGCcucggagaGGgGggGUGgCCCGggCGg -3'
miRNA:   3'- aGCGCCG--------CCgCuuCAUgGGGCuaGUg -5'
5580 3' -58.1 NC_001806.1 + 4734 0.68 0.718783
Target:  5'- uUCGCGGCcccgGGCcGGGg--CCCGGUCGCc -3'
miRNA:   3'- -AGCGCCG----CCGcUUCaugGGGCUAGUG- -5'
5580 3' -58.1 NC_001806.1 + 4907 0.69 0.649338
Target:  5'- gUCGCGGCGaGaCGgcGU-CCCCGGcguccUCGCc -3'
miRNA:   3'- -AGCGCCGC-C-GCuuCAuGGGGCU-----AGUG- -5'
5580 3' -58.1 NC_001806.1 + 6089 0.66 0.84421
Target:  5'- cCG-GGCGGCGggGggcgggucuCUCCGGcgCACa -3'
miRNA:   3'- aGCgCCGCCGCuuCau-------GGGGCUa-GUG- -5'
5580 3' -58.1 NC_001806.1 + 6560 0.66 0.84421
Target:  5'- aCGCGGgGGCGGAGgagggggcucACCCgCGuUCGu -3'
miRNA:   3'- aGCGCCgCCGCUUCa---------UGGG-GCuAGUg -5'
5580 3' -58.1 NC_001806.1 + 9776 0.67 0.775625
Target:  5'- -gGCGcGUGGgGAGGgGCCCCGAcgUGCg -3'
miRNA:   3'- agCGC-CGCCgCUUCaUGGGGCUa-GUG- -5'
5580 3' -58.1 NC_001806.1 + 10044 0.66 0.84421
Target:  5'- gCGCGGUGG-GggGUuuguucuggaacACCCCGcgUAg -3'
miRNA:   3'- aGCGCCGCCgCuuCA------------UGGGGCuaGUg -5'
5580 3' -58.1 NC_001806.1 + 13284 0.66 0.811167
Target:  5'- aCGCGGgGGCGugcaucAGGaACCCCaGGUUAUc -3'
miRNA:   3'- aGCGCCgCCGC------UUCaUGGGG-CUAGUG- -5'
5580 3' -58.1 NC_001806.1 + 18129 0.74 0.411126
Target:  5'- aUCGCcguucGCGGCGAAcgGCCCCGAcuuccUCACa -3'
miRNA:   3'- -AGCGc----CGCCGCUUcaUGGGGCU-----AGUG- -5'
5580 3' -58.1 NC_001806.1 + 20097 0.67 0.76641
Target:  5'- uUCGUGGcCGGCGccGUcugcggGCgUCGGUCGCg -3'
miRNA:   3'- -AGCGCC-GCCGCuuCA------UGgGGCUAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.