miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5580 3' -58.1 NC_001806.1 + 151559 0.72 0.520414
Target:  5'- -gGgGGCGGCGggG-GCCgCGAUgGCg -3'
miRNA:   3'- agCgCCGCCGCuuCaUGGgGCUAgUG- -5'
5580 3' -58.1 NC_001806.1 + 151450 0.78 0.234778
Target:  5'- -gGCGGCGGCGggGcgGCCgCGggCGCg -3'
miRNA:   3'- agCGCCGCCGCuuCa-UGGgGCuaGUG- -5'
5580 3' -58.1 NC_001806.1 + 151105 0.66 0.811167
Target:  5'- gUCGCGGgGGUcgcGggGgGCUCCGG-CGCc -3'
miRNA:   3'- -AGCGCCgCCG---CuuCaUGGGGCUaGUG- -5'
5580 3' -58.1 NC_001806.1 + 148115 0.69 0.645324
Target:  5'- cCGCGGcCGGCuGggGggcugcgugagacGCCCCGcccGUCACg -3'
miRNA:   3'- aGCGCC-GCCG-CuuCa------------UGGGGC---UAGUG- -5'
5580 3' -58.1 NC_001806.1 + 147745 0.66 0.828031
Target:  5'- gCGCGGgGGCGcgcGggUCCCGA-CGCg -3'
miRNA:   3'- aGCGCCgCCGCuu-CauGGGGCUaGUG- -5'
5580 3' -58.1 NC_001806.1 + 147695 0.73 0.464096
Target:  5'- gCGCGGgGGCGG---GCCCCGGagGCg -3'
miRNA:   3'- aGCGCCgCCGCUucaUGGGGCUagUG- -5'
5580 3' -58.1 NC_001806.1 + 146694 0.69 0.698184
Target:  5'- cUGCGGaaguccaGGCGcccacuaGGGUGCCCUGGUCGa -3'
miRNA:   3'- aGCGCCg------CCGC-------UUCAUGGGGCUAGUg -5'
5580 3' -58.1 NC_001806.1 + 144833 0.66 0.811167
Target:  5'- cCGCGGCGGUccGG-GCCCCG-UC-Cg -3'
miRNA:   3'- aGCGCCGCCGcuUCaUGGGGCuAGuG- -5'
5580 3' -58.1 NC_001806.1 + 144529 0.68 0.728486
Target:  5'- -aGCGGgGGCGcg--GCCgugCCGAUCGCg -3'
miRNA:   3'- agCGCCgCCGCuucaUGG---GGCUAGUG- -5'
5580 3' -58.1 NC_001806.1 + 141433 0.66 0.852024
Target:  5'- gCGCGGCcaaccGGCGGAuaACUCCGccCACg -3'
miRNA:   3'- aGCGCCG-----CCGCUUcaUGGGGCuaGUG- -5'
5580 3' -58.1 NC_001806.1 + 140023 0.67 0.784717
Target:  5'- cUCGC-GCGGCGAAaGcGCCCgGAgcgcCACg -3'
miRNA:   3'- -AGCGcCGCCGCUU-CaUGGGgCUa---GUG- -5'
5580 3' -58.1 NC_001806.1 + 134979 0.7 0.628252
Target:  5'- gUCGCGGCGGCcaucccGGUgcccgaugcccccGCCCUGGUCcgGCg -3'
miRNA:   3'- -AGCGCCGCCGcu----UCA-------------UGGGGCUAG--UG- -5'
5580 3' -58.1 NC_001806.1 + 134452 0.66 0.831324
Target:  5'- aCGCGuucgaauggggacguGCGGCGAcccgcgACCCCGAgcCACg -3'
miRNA:   3'- aGCGC---------------CGCCGCUuca---UGGGGCUa-GUG- -5'
5580 3' -58.1 NC_001806.1 + 132789 0.66 0.828031
Target:  5'- -gGCGGUGGCGcGGUggcAUCCCGc-CACu -3'
miRNA:   3'- agCGCCGCCGCuUCA---UGGGGCuaGUG- -5'
5580 3' -58.1 NC_001806.1 + 132148 0.66 0.828031
Target:  5'- -gGCGGCGcGCGuugccGAGcAUCCCGAcgCGCg -3'
miRNA:   3'- agCGCCGC-CGC-----UUCaUGGGGCUa-GUG- -5'
5580 3' -58.1 NC_001806.1 + 131468 0.67 0.802496
Target:  5'- aC-CGGCGGCGcuGUugCCgGAaCGCa -3'
miRNA:   3'- aGcGCCGCCGCuuCAugGGgCUaGUG- -5'
5580 3' -58.1 NC_001806.1 + 130841 0.66 0.811167
Target:  5'- aCuCGGCGGCcgggggaucugGGAGgaccuucgGCCCCGAUgACg -3'
miRNA:   3'- aGcGCCGCCG-----------CUUCa-------UGGGGCUAgUG- -5'
5580 3' -58.1 NC_001806.1 + 128973 0.66 0.855096
Target:  5'- gCGCGGauguuguaCGGgGGggauuuggccgaaugGGUGCCCCGGguUCACc -3'
miRNA:   3'- aGCGCC--------GCCgCU---------------UCAUGGGGCU--AGUG- -5'
5580 3' -58.1 NC_001806.1 + 126135 0.75 0.354301
Target:  5'- aCGaCGGCGGCGAGGccgGCgCCGA-CACg -3'
miRNA:   3'- aGC-GCCGCCGCUUCa--UGgGGCUaGUG- -5'
5580 3' -58.1 NC_001806.1 + 123842 0.67 0.775625
Target:  5'- cCGCGaGCGGCuucgcgcgGGAcUAUCCCGAUgGCg -3'
miRNA:   3'- aGCGC-CGCCG--------CUUcAUGGGGCUAgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.