miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5580 5' -58.5 NC_001806.1 + 90487 0.66 0.821147
Target:  5'- uGGCUuuUCGGAcuaCACCCCCCGGccCGg -3'
miRNA:   3'- uCUGAu-AGUCUc--GUGGGGGGCCcaGC- -5'
5580 5' -58.5 NC_001806.1 + 31966 0.66 0.821147
Target:  5'- gGGGCgggaCGGGGCGCCCaaaaggGGGUCGg -3'
miRNA:   3'- -UCUGaua-GUCUCGUGGGggg---CCCAGC- -5'
5580 5' -58.5 NC_001806.1 + 4147 0.66 0.813521
Target:  5'- cGGCUGUCGcccaggccgccguacAGCACCcgCCCCGGGggCGg -3'
miRNA:   3'- uCUGAUAGUc--------------UCGUGG--GGGGCCCa-GC- -5'
5580 5' -58.5 NC_001806.1 + 17165 0.66 0.812666
Target:  5'- -cGCUccaAGGGC-CCCCCCGGGaaggCGg -3'
miRNA:   3'- ucUGAuagUCUCGuGGGGGGCCCa---GC- -5'
5580 5' -58.5 NC_001806.1 + 21772 0.66 0.804028
Target:  5'- cGGGCgggGUCcgucGAGCGCggcgccggcagCCCCCGGG-CGg -3'
miRNA:   3'- -UCUGa--UAGu---CUCGUG-----------GGGGGCCCaGC- -5'
5580 5' -58.5 NC_001806.1 + 56690 0.66 0.804028
Target:  5'- gGGACg---GGGGC-CCgggaaCCCCGGGUCGc -3'
miRNA:   3'- -UCUGauagUCUCGuGG-----GGGGCCCAGC- -5'
5580 5' -58.5 NC_001806.1 + 63378 0.66 0.804028
Target:  5'- cAGAg-GUUGGAGCcggcgauggccGCCCCCUGGGUg- -3'
miRNA:   3'- -UCUgaUAGUCUCG-----------UGGGGGGCCCAgc -5'
5580 5' -58.5 NC_001806.1 + 21951 0.66 0.795241
Target:  5'- cGGGCccuUCAcggccGGGCAgCCCCggCGGGUCGa -3'
miRNA:   3'- -UCUGau-AGU-----CUCGUgGGGG--GCCCAGC- -5'
5580 5' -58.5 NC_001806.1 + 129654 0.67 0.786311
Target:  5'- cAGGCUGcCcu-GCGCCCgCCCGGGcCGc -3'
miRNA:   3'- -UCUGAUaGucuCGUGGG-GGGCCCaGC- -5'
5580 5' -58.5 NC_001806.1 + 151241 0.67 0.777249
Target:  5'- gGGAgggGUCAGcccCGCCCCCCGGGcCc -3'
miRNA:   3'- -UCUga-UAGUCuc-GUGGGGGGCCCaGc -5'
5580 5' -58.5 NC_001806.1 + 106657 0.67 0.768985
Target:  5'- uAGAUcggGUCGGGGaccccgcggacgaaaACCCCCCGGGg-- -3'
miRNA:   3'- -UCUGa--UAGUCUCg--------------UGGGGGGCCCagc -5'
5580 5' -58.5 NC_001806.1 + 30907 0.67 0.739835
Target:  5'- gAGACUucCGGGGCcguCCCCgCGGG-CGg -3'
miRNA:   3'- -UCUGAuaGUCUCGu--GGGGgGCCCaGC- -5'
5580 5' -58.5 NC_001806.1 + 37619 0.67 0.739835
Target:  5'- gGGGCUAUucgCGGcgggaaacGGCugCCCCCcaaagGGGUCGu -3'
miRNA:   3'- -UCUGAUA---GUC--------UCGugGGGGG-----CCCAGC- -5'
5580 5' -58.5 NC_001806.1 + 151517 0.68 0.709817
Target:  5'- gGGACUGUgCGGuugggacGGCGCCCgugggCCCGGG-CGg -3'
miRNA:   3'- -UCUGAUA-GUC-------UCGUGGG-----GGGCCCaGC- -5'
5580 5' -58.5 NC_001806.1 + 17206 0.68 0.691101
Target:  5'- aGGGCccuuaaauuuUUAGAGCAgCCCCCGcGUCGg -3'
miRNA:   3'- -UCUGau--------AGUCUCGUgGGGGGCcCAGC- -5'
5580 5' -58.5 NC_001806.1 + 107187 0.68 0.678193
Target:  5'- uGGGCUAUCAGcuGGCcuucgugcuggauaGCCCCUCGGcGUaCGa -3'
miRNA:   3'- -UCUGAUAGUC--UCG--------------UGGGGGGCC-CA-GC- -5'
5580 5' -58.5 NC_001806.1 + 131360 0.69 0.65121
Target:  5'- -cGCUGUCGGAGCuCCCCaCCGaGGcCu -3'
miRNA:   3'- ucUGAUAGUCUCGuGGGG-GGC-CCaGc -5'
5580 5' -58.5 NC_001806.1 + 3515 0.69 0.64118
Target:  5'- cGGGCggcGUCGGGGUcgucGCCCCCCGcGGgggaggCGg -3'
miRNA:   3'- -UCUGa--UAGUCUCG----UGGGGGGC-CCa-----GC- -5'
5580 5' -58.5 NC_001806.1 + 148413 0.69 0.621109
Target:  5'- uGGGCga-CAGGGCccucaccguguGCCCCCCcaGGGUCa -3'
miRNA:   3'- -UCUGauaGUCUCG-----------UGGGGGG--CCCAGc -5'
5580 5' -58.5 NC_001806.1 + 22884 0.7 0.611082
Target:  5'- gGGGCUGgcCGGGGCccggcccgccaGCCCCCCGcGGcCGg -3'
miRNA:   3'- -UCUGAUa-GUCUCG-----------UGGGGGGC-CCaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.