miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5581 3' -56 NC_001806.1 + 122983 1.06 0.004201
Target:  5'- aAAAAGGGCACUCGUAGGGCAUCGCCGc -3'
miRNA:   3'- -UUUUCCCGUGAGCAUCCCGUAGCGGC- -5'
5581 3' -56 NC_001806.1 + 86014 0.76 0.362424
Target:  5'- -cGGGGGCGCUUGgccggggAGGGCAggGCCGc -3'
miRNA:   3'- uuUUCCCGUGAGCa------UCCCGUagCGGC- -5'
5581 3' -56 NC_001806.1 + 29531 0.74 0.47739
Target:  5'- uGGGGGGGCACaCGgugAGGGCccuGUCGCCc -3'
miRNA:   3'- -UUUUCCCGUGaGCa--UCCCG---UAGCGGc -5'
5581 3' -56 NC_001806.1 + 2864 0.73 0.486982
Target:  5'- gAGGGGGGCGCgggCGUccgagccgGGGGCGUccgCGCCGc -3'
miRNA:   3'- -UUUUCCCGUGa--GCA--------UCCCGUA---GCGGC- -5'
5581 3' -56 NC_001806.1 + 112574 0.73 0.496663
Target:  5'- ----cGGCGCUCGUGauGGGCAagGCCGu -3'
miRNA:   3'- uuuucCCGUGAGCAU--CCCGUagCGGC- -5'
5581 3' -56 NC_001806.1 + 65312 0.73 0.526203
Target:  5'- -cAAGGGC-CUCgGUGGGGaCGUCgGCCGu -3'
miRNA:   3'- uuUUCCCGuGAG-CAUCCC-GUAG-CGGC- -5'
5581 3' -56 NC_001806.1 + 69699 0.73 0.535196
Target:  5'- ---cGGGCGCUCGUGGGGgaGUUugagacgGCCGa -3'
miRNA:   3'- uuuuCCCGUGAGCAUCCCg-UAG-------CGGC- -5'
5581 3' -56 NC_001806.1 + 81654 0.71 0.638694
Target:  5'- cGGGAGGGCugU-GUGGGGCGaaggCGuCCGg -3'
miRNA:   3'- -UUUUCCCGugAgCAUCCCGUa---GC-GGC- -5'
5581 3' -56 NC_001806.1 + 146791 0.7 0.700401
Target:  5'- ---cGGGUACUCGgGGGGCAUCa--- -3'
miRNA:   3'- uuuuCCCGUGAGCaUCCCGUAGcggc -5'
5581 3' -56 NC_001806.1 + 147493 0.7 0.700401
Target:  5'- cGGGGcGGCGC-CGgagGGGGCggCGCCGc -3'
miRNA:   3'- uUUUC-CCGUGaGCa--UCCCGuaGCGGC- -5'
5581 3' -56 NC_001806.1 + 96417 0.7 0.710533
Target:  5'- ---uGGGCGCUCuUGGGGUugaCGCUGg -3'
miRNA:   3'- uuuuCCCGUGAGcAUCCCGua-GCGGC- -5'
5581 3' -56 NC_001806.1 + 103492 0.69 0.720597
Target:  5'- -cGGGGGCugUUGUcGGGUGgcuccCGCCGg -3'
miRNA:   3'- uuUUCCCGugAGCAuCCCGUa----GCGGC- -5'
5581 3' -56 NC_001806.1 + 86046 0.69 0.730584
Target:  5'- gGGGGGGGCggGCUCGUccccuGGGGCGgcggCGUCu -3'
miRNA:   3'- -UUUUCCCG--UGAGCA-----UCCCGUa---GCGGc -5'
5581 3' -56 NC_001806.1 + 37793 0.69 0.736535
Target:  5'- --cGGGGCGCggggguccgcgggCGggGGGGCAaUCGCCa -3'
miRNA:   3'- uuuUCCCGUGa------------GCa-UCCCGU-AGCGGc -5'
5581 3' -56 NC_001806.1 + 95445 0.69 0.740483
Target:  5'- -cAGGGGCcCgagaCGUGGGGggaCAUCGCCa -3'
miRNA:   3'- uuUUCCCGuGa---GCAUCCC---GUAGCGGc -5'
5581 3' -56 NC_001806.1 + 99672 0.69 0.759982
Target:  5'- --uGGGGCAUaCGggggagugGGGGCAUgggaCGCCGg -3'
miRNA:   3'- uuuUCCCGUGaGCa-------UCCCGUA----GCGGC- -5'
5581 3' -56 NC_001806.1 + 21295 0.68 0.769563
Target:  5'- cGGGAGGGCcCccgCGgcGGGCAccgaCGCCGg -3'
miRNA:   3'- -UUUUCCCGuGa--GCauCCCGUa---GCGGC- -5'
5581 3' -56 NC_001806.1 + 100826 0.68 0.788338
Target:  5'- cGAAAGGGCGCga-UGGcGGCGUCGagaCCGg -3'
miRNA:   3'- -UUUUCCCGUGagcAUC-CCGUAGC---GGC- -5'
5581 3' -56 NC_001806.1 + 55632 0.68 0.797515
Target:  5'- -uGGGGGUugUUGgGGGGC-UgGCCGg -3'
miRNA:   3'- uuUUCCCGugAGCaUCCCGuAgCGGC- -5'
5581 3' -56 NC_001806.1 + 2764 0.68 0.815401
Target:  5'- --cGGGGCGCg-GgcGGGCcugCGCCGc -3'
miRNA:   3'- uuuUCCCGUGagCauCCCGua-GCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.