miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5581 3' -56 NC_001806.1 + 2731 0.66 0.893408
Target:  5'- --cGGGGCcCUCGgcGGGCcggCGCg- -3'
miRNA:   3'- uuuUCCCGuGAGCauCCCGua-GCGgc -5'
5581 3' -56 NC_001806.1 + 2764 0.68 0.815401
Target:  5'- --cGGGGCGCg-GgcGGGCcugCGCCGc -3'
miRNA:   3'- uuuUCCCGUGagCauCCCGua-GCGGC- -5'
5581 3' -56 NC_001806.1 + 2864 0.73 0.486982
Target:  5'- gAGGGGGGCGCgggCGUccgagccgGGGGCGUccgCGCCGc -3'
miRNA:   3'- -UUUUCCCGUGa--GCA--------UCCCGUA---GCGGC- -5'
5581 3' -56 NC_001806.1 + 4958 0.66 0.878073
Target:  5'- -cGGGGGCcCUCccgucccgccGGGCGUCGUCGa -3'
miRNA:   3'- uuUUCCCGuGAGcau-------CCCGUAGCGGC- -5'
5581 3' -56 NC_001806.1 + 13000 0.66 0.879513
Target:  5'- --cAGGGUGCUCGUGuauggggccuuGGGCccgUGCCa -3'
miRNA:   3'- uuuUCCCGUGAGCAU-----------CCCGua-GCGGc -5'
5581 3' -56 NC_001806.1 + 16288 0.66 0.886576
Target:  5'- aGGAGGGGCAggaUCGccGGGUgguccaGUCGCCu -3'
miRNA:   3'- -UUUUCCCGUg--AGCauCCCG------UAGCGGc -5'
5581 3' -56 NC_001806.1 + 21295 0.68 0.769563
Target:  5'- cGGGAGGGCcCccgCGgcGGGCAccgaCGCCGg -3'
miRNA:   3'- -UUUUCCCGuGa--GCauCCCGUa---GCGGC- -5'
5581 3' -56 NC_001806.1 + 22129 0.66 0.879513
Target:  5'- uGGGGGGCGCccgaggCGgaggAGGcGCGaCGCCGg -3'
miRNA:   3'- uUUUCCCGUGa-----GCa---UCC-CGUaGCGGC- -5'
5581 3' -56 NC_001806.1 + 22195 0.66 0.872225
Target:  5'- ---uGGGCGCcCGagcuGGGCGaCGCCGc -3'
miRNA:   3'- uuuuCCCGUGaGCau--CCCGUaGCGGC- -5'
5581 3' -56 NC_001806.1 + 29531 0.74 0.47739
Target:  5'- uGGGGGGGCACaCGgugAGGGCccuGUCGCCc -3'
miRNA:   3'- -UUUUCCCGUGaGCa--UCCCG---UAGCGGc -5'
5581 3' -56 NC_001806.1 + 34299 0.66 0.886576
Target:  5'- --uGGGGUuuaGCggCGgGGGGCGgcgCGCCGg -3'
miRNA:   3'- uuuUCCCG---UGa-GCaUCCCGUa--GCGGC- -5'
5581 3' -56 NC_001806.1 + 35503 0.66 0.893408
Target:  5'- gGAGAGGGCGaggCGUcGGaGCGggGCCGc -3'
miRNA:   3'- -UUUUCCCGUga-GCAuCC-CGUagCGGC- -5'
5581 3' -56 NC_001806.1 + 37793 0.69 0.736535
Target:  5'- --cGGGGCGCggggguccgcgggCGggGGGGCAaUCGCCa -3'
miRNA:   3'- uuuUCCCGUGa------------GCa-UCCCGU-AGCGGc -5'
5581 3' -56 NC_001806.1 + 38186 0.67 0.849064
Target:  5'- --uGGGGCGCUgGUugaggaucguuGGGGCccUGCCGc -3'
miRNA:   3'- uuuUCCCGUGAgCA-----------UCCCGuaGCGGC- -5'
5581 3' -56 NC_001806.1 + 55632 0.68 0.797515
Target:  5'- -uGGGGGUugUUGgGGGGC-UgGCCGg -3'
miRNA:   3'- uuUUCCCGugAGCaUCCCGuAgCGGC- -5'
5581 3' -56 NC_001806.1 + 63684 0.66 0.872225
Target:  5'- cAGAGGGCGCugaagauauugUCGcagcgcuGGGCcucuUCGCCGg -3'
miRNA:   3'- uUUUCCCGUG-----------AGCau-----CCCGu---AGCGGC- -5'
5581 3' -56 NC_001806.1 + 65312 0.73 0.526203
Target:  5'- -cAAGGGC-CUCgGUGGGGaCGUCgGCCGu -3'
miRNA:   3'- uuUUCCCGuGAG-CAUCCC-GUAG-CGGC- -5'
5581 3' -56 NC_001806.1 + 69699 0.73 0.535196
Target:  5'- ---cGGGCGCUCGUGGGGgaGUUugagacgGCCGa -3'
miRNA:   3'- uuuuCCCGUGAGCAUCCCg-UAG-------CGGC- -5'
5581 3' -56 NC_001806.1 + 81654 0.71 0.638694
Target:  5'- cGGGAGGGCugU-GUGGGGCGaaggCGuCCGg -3'
miRNA:   3'- -UUUUCCCGugAgCAUCCCGUa---GC-GGC- -5'
5581 3' -56 NC_001806.1 + 86014 0.76 0.362424
Target:  5'- -cGGGGGCGCUUGgccggggAGGGCAggGCCGc -3'
miRNA:   3'- uuUUCCCGUGAGCa------UCCCGUagCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.