miRNA display CGI


Results 21 - 40 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5582 3' -53.5 NC_001806.1 + 10637 0.66 0.959366
Target:  5'- -gGUUAAcCA-CGGCCGCgCGCuccuGCCACa -3'
miRNA:   3'- gaUAAUUuGUcGUCGGCG-GCG----CGGUG- -5'
5582 3' -53.5 NC_001806.1 + 17212 0.66 0.951416
Target:  5'- --cUUAAAUuuuuagAGCAGCCcCCGCGUCGg -3'
miRNA:   3'- gauAAUUUG------UCGUCGGcGGCGCGGUg -5'
5582 3' -53.5 NC_001806.1 + 20351 0.67 0.927208
Target:  5'- ----cGGGCGGCccuugGGCCGCC-CGCCGu -3'
miRNA:   3'- gauaaUUUGUCG-----UCGGCGGcGCGGUg -5'
5582 3' -53.5 NC_001806.1 + 21570 0.66 0.959366
Target:  5'- ----cGGACcGCcuGUCGCCGCGCC-Cg -3'
miRNA:   3'- gauaaUUUGuCGu-CGGCGGCGCGGuG- -5'
5582 3' -53.5 NC_001806.1 + 21886 0.67 0.932032
Target:  5'- ------cGCGGCcuccgcgGGCCGCaucgaGCGCCGCc -3'
miRNA:   3'- gauaauuUGUCG-------UCGGCGg----CGCGGUG- -5'
5582 3' -53.5 NC_001806.1 + 21927 0.71 0.731731
Target:  5'- -----cGGCGGUGGCCgGCCGCgacGCCACg -3'
miRNA:   3'- gauaauUUGUCGUCGG-CGGCG---CGGUG- -5'
5582 3' -53.5 NC_001806.1 + 22452 0.79 0.341272
Target:  5'- ------cGCGGCGGCCGCCGUgGCCAUg -3'
miRNA:   3'- gauaauuUGUCGUCGGCGGCG-CGGUG- -5'
5582 3' -53.5 NC_001806.1 + 22606 0.7 0.808978
Target:  5'- ----gAGGgGGUcGCCGCCGuCGCCGCc -3'
miRNA:   3'- gauaaUUUgUCGuCGGCGGC-GCGGUG- -5'
5582 3' -53.5 NC_001806.1 + 22692 0.74 0.58538
Target:  5'- ----gGGGCGGCuGuCCGCCGCGCC-Cg -3'
miRNA:   3'- gauaaUUUGUCGuC-GGCGGCGCGGuG- -5'
5582 3' -53.5 NC_001806.1 + 22926 0.7 0.808978
Target:  5'- ----gGGACccGCGGgccccgcuuccCCGCCGCGCCGCa -3'
miRNA:   3'- gauaaUUUGu-CGUC-----------GGCGGCGCGGUG- -5'
5582 3' -53.5 NC_001806.1 + 23060 0.74 0.574922
Target:  5'- -----cGGCAGCgaGGCCGCCGUgGCCGCc -3'
miRNA:   3'- gauaauUUGUCG--UCGGCGGCG-CGGUG- -5'
5582 3' -53.5 NC_001806.1 + 23144 0.8 0.289273
Target:  5'- cCUGccGAGCuccGCGGCCGCCGCcGCCGCg -3'
miRNA:   3'- -GAUaaUUUGu--CGUCGGCGGCG-CGGUG- -5'
5582 3' -53.5 NC_001806.1 + 23251 0.74 0.574922
Target:  5'- -----uGGCGGCcGCCGCCGCcuccGCCGCg -3'
miRNA:   3'- gauaauUUGUCGuCGGCGGCG----CGGUG- -5'
5582 3' -53.5 NC_001806.1 + 23459 0.72 0.700972
Target:  5'- ------cGCGGCgccccgGGCCGCCGCGgCGCa -3'
miRNA:   3'- gauaauuUGUCG------UCGGCGGCGCgGUG- -5'
5582 3' -53.5 NC_001806.1 + 23548 0.68 0.889823
Target:  5'- gCUGgc-GGCGGCAGCCcCCGgggcccaGCCACa -3'
miRNA:   3'- -GAUaauUUGUCGUCGGcGGCg------CGGUG- -5'
5582 3' -53.5 NC_001806.1 + 24406 0.67 0.921607
Target:  5'- -----cGACGcGCcGCCGCUGCGCCu- -3'
miRNA:   3'- gauaauUUGU-CGuCGGCGGCGCGGug -5'
5582 3' -53.5 NC_001806.1 + 24793 0.69 0.835396
Target:  5'- -----cGACGGCccgggggcccuGCCGCCGgCGCCGCc -3'
miRNA:   3'- gauaauUUGUCGu----------CGGCGGC-GCGGUG- -5'
5582 3' -53.5 NC_001806.1 + 26369 0.66 0.951416
Target:  5'- uCUGUcuccAUGGCccGCCGCCGCcGCCAUc -3'
miRNA:   3'- -GAUAauu-UGUCGu-CGGCGGCG-CGGUG- -5'
5582 3' -53.5 NC_001806.1 + 26496 0.72 0.68014
Target:  5'- ----gGAGCGcgcccGCGGCCGCCcCGCCGCc -3'
miRNA:   3'- gauaaUUUGU-----CGUCGGCGGcGCGGUG- -5'
5582 3' -53.5 NC_001806.1 + 26949 0.7 0.826776
Target:  5'- ---cUGGGCcuCGGCCGCCcgccuggcGCGCCGCg -3'
miRNA:   3'- gauaAUUUGucGUCGGCGG--------CGCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.