miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5582 3' -53.5 NC_001806.1 + 1377 0.66 0.959366
Target:  5'- ------cACGGCccccGCCGCCGCcagcacgguGCCGCu -3'
miRNA:   3'- gauaauuUGUCGu---CGGCGGCG---------CGGUG- -5'
5582 3' -53.5 NC_001806.1 + 1612 0.66 0.955512
Target:  5'- ------cGCAGCGGCgCGCCcaggccccaGCGCgCGCa -3'
miRNA:   3'- gauaauuUGUCGUCG-GCGG---------CGCG-GUG- -5'
5582 3' -53.5 NC_001806.1 + 1811 0.68 0.882728
Target:  5'- ------cGCGGUAgcgcacguuGCCGCCGCGgCACa -3'
miRNA:   3'- gauaauuUGUCGU---------CGGCGGCGCgGUG- -5'
5582 3' -53.5 NC_001806.1 + 1985 0.72 0.687454
Target:  5'- ----cGGGCAGCAGCUGCaCGCcagguaggcgugcuGCCGCg -3'
miRNA:   3'- gauaaUUUGUCGUCGGCG-GCG--------------CGGUG- -5'
5582 3' -53.5 NC_001806.1 + 2153 0.7 0.817967
Target:  5'- -----cAGCAGCAGCaCGCCcuguGCGCCcaGCg -3'
miRNA:   3'- gauaauUUGUCGUCG-GCGG----CGCGG--UG- -5'
5582 3' -53.5 NC_001806.1 + 2264 0.69 0.84382
Target:  5'- ----cAGGCAGgaCAGcCCGCCGCGCUcgGCg -3'
miRNA:   3'- gauaaUUUGUC--GUC-GGCGGCGCGG--UG- -5'
5582 3' -53.5 NC_001806.1 + 2661 0.79 0.341272
Target:  5'- ----aGGGCGGCGGCCGCgGgCGCCGCc -3'
miRNA:   3'- gauaaUUUGUCGUCGGCGgC-GCGGUG- -5'
5582 3' -53.5 NC_001806.1 + 2699 0.69 0.84382
Target:  5'- -----cGGgGGCuGCCGCCGCcaGCCGCc -3'
miRNA:   3'- gauaauUUgUCGuCGGCGGCG--CGGUG- -5'
5582 3' -53.5 NC_001806.1 + 2786 0.67 0.937648
Target:  5'- ------cGCGGCGGcCCGggGCGCCGCg -3'
miRNA:   3'- gauaauuUGUCGUC-GGCggCGCGGUG- -5'
5582 3' -53.5 NC_001806.1 + 3000 0.75 0.554144
Target:  5'- -----cGGCGGCGGCCGCCaGCGCguCg -3'
miRNA:   3'- gauaauUUGUCGUCGGCGG-CGCGguG- -5'
5582 3' -53.5 NC_001806.1 + 3021 0.69 0.84382
Target:  5'- -----cGGCGGCguccggugcgcuGGCCGCCGCcGCCAg -3'
miRNA:   3'- gauaauUUGUCG------------UCGGCGGCG-CGGUg -5'
5582 3' -53.5 NC_001806.1 + 3093 0.69 0.867835
Target:  5'- -----cGGCGGCGGCgGCCGCGgaGCu -3'
miRNA:   3'- gauaauUUGUCGUCGgCGGCGCggUG- -5'
5582 3' -53.5 NC_001806.1 + 3187 0.71 0.771411
Target:  5'- ------cACGGCGGCCucgcuGCCGCcgGCCACg -3'
miRNA:   3'- gauaauuUGUCGUCGG-----CGGCG--CGGUG- -5'
5582 3' -53.5 NC_001806.1 + 3799 0.78 0.390972
Target:  5'- ------cACGGCGGCCGCCGCGUgCGCc -3'
miRNA:   3'- gauaauuUGUCGUCGGCGGCGCG-GUG- -5'
5582 3' -53.5 NC_001806.1 + 4184 0.71 0.761664
Target:  5'- ----gGGGCGGgGGCCcggcGCCGgGCCACg -3'
miRNA:   3'- gauaaUUUGUCgUCGG----CGGCgCGGUG- -5'
5582 3' -53.5 NC_001806.1 + 4442 0.72 0.690582
Target:  5'- ----gGGGCGGCguccgcccgggGGCUGCCgGCGCCGCg -3'
miRNA:   3'- gauaaUUUGUCG-----------UCGGCGG-CGCGGUG- -5'
5582 3' -53.5 NC_001806.1 + 5505 0.69 0.852039
Target:  5'- ----gGAGCAGCggaGGCCGCCG-GCCc- -3'
miRNA:   3'- gauaaUUUGUCG---UCGGCGGCgCGGug -5'
5582 3' -53.5 NC_001806.1 + 5894 0.66 0.955512
Target:  5'- ----cGGGCGGCccaagGGCCGcCCGCcuuGCCGCc -3'
miRNA:   3'- gauaaUUUGUCG-----UCGGC-GGCG---CGGUG- -5'
5582 3' -53.5 NC_001806.1 + 9807 0.67 0.915752
Target:  5'- ----gGGugGGCucGGCCaaauCCGCGCCGCg -3'
miRNA:   3'- gauaaUUugUCG--UCGGc---GGCGCGGUG- -5'
5582 3' -53.5 NC_001806.1 + 9983 0.68 0.903284
Target:  5'- -----uGACGGaGGCCGCC-UGCCACg -3'
miRNA:   3'- gauaauUUGUCgUCGGCGGcGCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.