Results 1 - 20 of 135 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5582 | 3' | -53.5 | NC_001806.1 | + | 122859 | 1.11 | 0.003261 |
Target: 5'- gCUAUUAAACAGCAGCCGCCGCGCCACg -3' miRNA: 3'- -GAUAAUUUGUCGUCGGCGGCGCGGUG- -5' |
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5582 | 3' | -53.5 | NC_001806.1 | + | 144183 | 0.83 | 0.204256 |
Target: 5'- ------cACGGCGGCCGCCGCaGCCGCc -3' miRNA: 3'- gauaauuUGUCGUCGGCGGCG-CGGUG- -5' |
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5582 | 3' | -53.5 | NC_001806.1 | + | 23144 | 0.8 | 0.289273 |
Target: 5'- cCUGccGAGCuccGCGGCCGCCGCcGCCGCg -3' miRNA: 3'- -GAUaaUUUGu--CGUCGGCGGCG-CGGUG- -5' |
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5582 | 3' | -53.5 | NC_001806.1 | + | 2661 | 0.79 | 0.341272 |
Target: 5'- ----aGGGCGGCGGCCGCgGgCGCCGCc -3' miRNA: 3'- gauaaUUUGUCGUCGGCGgC-GCGGUG- -5' |
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5582 | 3' | -53.5 | NC_001806.1 | + | 22452 | 0.79 | 0.341272 |
Target: 5'- ------cGCGGCGGCCGCCGUgGCCAUg -3' miRNA: 3'- gauaauuUGUCGUCGGCGGCG-CGGUG- -5' |
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5582 | 3' | -53.5 | NC_001806.1 | + | 131877 | 0.79 | 0.34923 |
Target: 5'- --------uGGCGGCCGcCCGCGCCGCg -3' miRNA: 3'- gauaauuugUCGUCGGC-GGCGCGGUG- -5' |
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5582 | 3' | -53.5 | NC_001806.1 | + | 3799 | 0.78 | 0.390972 |
Target: 5'- ------cACGGCGGCCGCCGCGUgCGCc -3' miRNA: 3'- gauaauuUGUCGUCGGCGGCGCG-GUG- -5' |
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5582 | 3' | -53.5 | NC_001806.1 | + | 148021 | 0.78 | 0.390972 |
Target: 5'- -----uGGCGGgAGCCGCCGCcGCCGCu -3' miRNA: 3'- gauaauUUGUCgUCGGCGGCG-CGGUG- -5' |
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5582 | 3' | -53.5 | NC_001806.1 | + | 76517 | 0.77 | 0.445162 |
Target: 5'- ----cAAACAGCAGCgCGCCGaaGCCACc -3' miRNA: 3'- gauaaUUUGUCGUCG-GCGGCg-CGGUG- -5' |
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5582 | 3' | -53.5 | NC_001806.1 | + | 27270 | 0.76 | 0.473786 |
Target: 5'- aCUGgccaauCGGCGGCCGCCaGCGCgGCg -3' miRNA: 3'- -GAUaauuu-GUCGUCGGCGG-CGCGgUG- -5' |
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5582 | 3' | -53.5 | NC_001806.1 | + | 29939 | 0.75 | 0.510308 |
Target: 5'- ----gGGGCGGCucccgccagucgcgAGCCGCgGCGCCGCg -3' miRNA: 3'- gauaaUUUGUCG--------------UCGGCGgCGCGGUG- -5' |
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5582 | 3' | -53.5 | NC_001806.1 | + | 3000 | 0.75 | 0.554144 |
Target: 5'- -----cGGCGGCGGCCGCCaGCGCguCg -3' miRNA: 3'- gauaauUUGUCGUCGGCGG-CGCGguG- -5' |
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5582 | 3' | -53.5 | NC_001806.1 | + | 23060 | 0.74 | 0.574922 |
Target: 5'- -----cGGCAGCgaGGCCGCCGUgGCCGCc -3' miRNA: 3'- gauaauUUGUCG--UCGGCGGCG-CGGUG- -5' |
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5582 | 3' | -53.5 | NC_001806.1 | + | 23251 | 0.74 | 0.574922 |
Target: 5'- -----uGGCGGCcGCCGCCGCcuccGCCGCg -3' miRNA: 3'- gauaauUUGUCGuCGGCGGCG----CGGUG- -5' |
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5582 | 3' | -53.5 | NC_001806.1 | + | 89520 | 0.74 | 0.574922 |
Target: 5'- ----cGGGCGGCgAGCUGCUGCGCgGCg -3' miRNA: 3'- gauaaUUUGUCG-UCGGCGGCGCGgUG- -5' |
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5582 | 3' | -53.5 | NC_001806.1 | + | 132828 | 0.74 | 0.574922 |
Target: 5'- aCUGUUAGACccgcccGCGGCCGUCGgGCC-Cg -3' miRNA: 3'- -GAUAAUUUGu-----CGUCGGCGGCgCGGuG- -5' |
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5582 | 3' | -53.5 | NC_001806.1 | + | 22692 | 0.74 | 0.58538 |
Target: 5'- ----gGGGCGGCuGuCCGCCGCGCC-Cg -3' miRNA: 3'- gauaaUUUGUCGuC-GGCGGCGCGGuG- -5' |
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5582 | 3' | -53.5 | NC_001806.1 | + | 86089 | 0.74 | 0.595873 |
Target: 5'- ----cGGAgGGCGGCCaGCCGCGCgACc -3' miRNA: 3'- gauaaUUUgUCGUCGG-CGGCGCGgUG- -5' |
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5582 | 3' | -53.5 | NC_001806.1 | + | 79075 | 0.74 | 0.595873 |
Target: 5'- ----cGGGCGGCGaggacguccucGCCGCCaGCGCCACc -3' miRNA: 3'- gauaaUUUGUCGU-----------CGGCGG-CGCGGUG- -5' |
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5582 | 3' | -53.5 | NC_001806.1 | + | 105131 | 0.74 | 0.605341 |
Target: 5'- ----gGGACAGCuuucgggGGCgGCCGUGCCGCc -3' miRNA: 3'- gauaaUUUGUCG-------UCGgCGGCGCGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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