miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5582 3' -53.5 NC_001806.1 + 111249 0.66 0.947076
Target:  5'- ----cGGACAGCuuuGCCGCCucUGCCAa -3'
miRNA:   3'- gauaaUUUGUCGu--CGGCGGc-GCGGUg -5'
5582 3' -53.5 NC_001806.1 + 96511 0.66 0.959366
Target:  5'- ----cGAACGGgGGCCcuGCCacuccgGCGCCGCc -3'
miRNA:   3'- gauaaUUUGUCgUCGG--CGG------CGCGGUG- -5'
5582 3' -53.5 NC_001806.1 + 51093 0.66 0.955512
Target:  5'- aUGggAGACgaGGgGGCCGCCGCcCUGCg -3'
miRNA:   3'- gAUaaUUUG--UCgUCGGCGGCGcGGUG- -5'
5582 3' -53.5 NC_001806.1 + 41200 0.66 0.942487
Target:  5'- ---cUGAACcGCAGCCagagccCCGCGCCu- -3'
miRNA:   3'- gauaAUUUGuCGUCGGc-----GGCGCGGug -5'
5582 3' -53.5 NC_001806.1 + 147494 0.66 0.958991
Target:  5'- ----gGGGCGGC-GCCggaggggGCgGCGCCGCg -3'
miRNA:   3'- gauaaUUUGUCGuCGG-------CGgCGCGGUG- -5'
5582 3' -53.5 NC_001806.1 + 108534 0.66 0.947076
Target:  5'- -------cCGGCGGCCcgcgugcggcugGCCGCGCC-Cg -3'
miRNA:   3'- gauaauuuGUCGUCGG------------CGGCGCGGuG- -5'
5582 3' -53.5 NC_001806.1 + 50723 0.66 0.942487
Target:  5'- ------uGCAGCGGCUGCUGgGCUuuGCc -3'
miRNA:   3'- gauaauuUGUCGUCGGCGGCgCGG--UG- -5'
5582 3' -53.5 NC_001806.1 + 95252 0.66 0.942487
Target:  5'- ----cGAACAGUgcgacgaggAGgCGCUGCGUCGCg -3'
miRNA:   3'- gauaaUUUGUCG---------UCgGCGGCGCGGUG- -5'
5582 3' -53.5 NC_001806.1 + 77961 0.66 0.942487
Target:  5'- ------cGCGGCGGCC-CCGgggcCGCCGCu -3'
miRNA:   3'- gauaauuUGUCGUCGGcGGC----GCGGUG- -5'
5582 3' -53.5 NC_001806.1 + 126136 0.66 0.951416
Target:  5'- -----cGACGGCGGCgagGCCGgCGCCGa -3'
miRNA:   3'- gauaauUUGUCGUCGg--CGGC-GCGGUg -5'
5582 3' -53.5 NC_001806.1 + 1377 0.66 0.959366
Target:  5'- ------cACGGCccccGCCGCCGCcagcacgguGCCGCu -3'
miRNA:   3'- gauaauuUGUCGu---CGGCGGCG---------CGGUG- -5'
5582 3' -53.5 NC_001806.1 + 78253 0.66 0.955512
Target:  5'- aUGUUcgGCAcGCGGCUGgCagacugGCGCCGCg -3'
miRNA:   3'- gAUAAuuUGU-CGUCGGCgG------CGCGGUG- -5'
5582 3' -53.5 NC_001806.1 + 99941 0.66 0.955512
Target:  5'- ----aGAAUGGCgGGCCG-CGCGCCGg -3'
miRNA:   3'- gauaaUUUGUCG-UCGGCgGCGCGGUg -5'
5582 3' -53.5 NC_001806.1 + 17212 0.66 0.951416
Target:  5'- --cUUAAAUuuuuagAGCAGCCcCCGCGUCGg -3'
miRNA:   3'- gauAAUUUG------UCGUCGGcGGCGCGGUg -5'
5582 3' -53.5 NC_001806.1 + 1612 0.66 0.955512
Target:  5'- ------cGCAGCGGCgCGCCcaggccccaGCGCgCGCa -3'
miRNA:   3'- gauaauuUGUCGUCG-GCGG---------CGCG-GUG- -5'
5582 3' -53.5 NC_001806.1 + 90834 0.66 0.942487
Target:  5'- cCUGUUcgAGGCGGUcgugggacccGCCGCCGUGgCACu -3'
miRNA:   3'- -GAUAA--UUUGUCGu---------CGGCGGCGCgGUG- -5'
5582 3' -53.5 NC_001806.1 + 95539 0.66 0.955512
Target:  5'- -cGUUGGcCAGCcugGGgCGCUGCGuCCGCg -3'
miRNA:   3'- gaUAAUUuGUCG---UCgGCGGCGC-GGUG- -5'
5582 3' -53.5 NC_001806.1 + 10637 0.66 0.959366
Target:  5'- -gGUUAAcCA-CGGCCGCgCGCuccuGCCACa -3'
miRNA:   3'- gaUAAUUuGUcGUCGGCG-GCG----CGGUG- -5'
5582 3' -53.5 NC_001806.1 + 26369 0.66 0.951416
Target:  5'- uCUGUcuccAUGGCccGCCGCCGCcGCCAUc -3'
miRNA:   3'- -GAUAauu-UGUCGu-CGGCGGCG-CGGUG- -5'
5582 3' -53.5 NC_001806.1 + 5894 0.66 0.955512
Target:  5'- ----cGGGCGGCccaagGGCCGcCCGCcuuGCCGCc -3'
miRNA:   3'- gauaaUUUGUCG-----UCGGC-GGCG---CGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.