miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5582 3' -53.5 NC_001806.1 + 96511 0.66 0.959366
Target:  5'- ----cGAACGGgGGCCcuGCCacuccgGCGCCGCc -3'
miRNA:   3'- gauaaUUUGUCgUCGG--CGG------CGCGGUG- -5'
5582 3' -53.5 NC_001806.1 + 23060 0.74 0.574922
Target:  5'- -----cGGCAGCgaGGCCGCCGUgGCCGCc -3'
miRNA:   3'- gauaauUUGUCG--UCGGCGGCG-CGGUG- -5'
5582 3' -53.5 NC_001806.1 + 23251 0.74 0.574922
Target:  5'- -----uGGCGGCcGCCGCCGCcuccGCCGCg -3'
miRNA:   3'- gauaauUUGUCGuCGGCGGCG----CGGUG- -5'
5582 3' -53.5 NC_001806.1 + 89520 0.74 0.574922
Target:  5'- ----cGGGCGGCgAGCUGCUGCGCgGCg -3'
miRNA:   3'- gauaaUUUGUCG-UCGGCGGCGCGgUG- -5'
5582 3' -53.5 NC_001806.1 + 132828 0.74 0.574922
Target:  5'- aCUGUUAGACccgcccGCGGCCGUCGgGCC-Cg -3'
miRNA:   3'- -GAUAAUUUGu-----CGUCGGCGGCgCGGuG- -5'
5582 3' -53.5 NC_001806.1 + 22692 0.74 0.58538
Target:  5'- ----gGGGCGGCuGuCCGCCGCGCC-Cg -3'
miRNA:   3'- gauaaUUUGUCGuC-GGCGGCGCGGuG- -5'
5582 3' -53.5 NC_001806.1 + 86089 0.74 0.595873
Target:  5'- ----cGGAgGGCGGCCaGCCGCGCgACc -3'
miRNA:   3'- gauaaUUUgUCGUCGG-CGGCGCGgUG- -5'
5582 3' -53.5 NC_001806.1 + 79075 0.74 0.595873
Target:  5'- ----cGGGCGGCGaggacguccucGCCGCCaGCGCCACc -3'
miRNA:   3'- gauaaUUUGUCGU-----------CGGCGG-CGCGGUG- -5'
5582 3' -53.5 NC_001806.1 + 105131 0.74 0.605341
Target:  5'- ----gGGACAGCuuucgggGGCgGCCGUGCCGCc -3'
miRNA:   3'- gauaaUUUGUCG-------UCGgCGGCGCGGUG- -5'
5582 3' -53.5 NC_001806.1 + 3000 0.75 0.554144
Target:  5'- -----cGGCGGCGGCCGCCaGCGCguCg -3'
miRNA:   3'- gauaauUUGUCGUCGGCGG-CGCGguG- -5'
5582 3' -53.5 NC_001806.1 + 29939 0.75 0.510308
Target:  5'- ----gGGGCGGCucccgccagucgcgAGCCGCgGCGCCGCg -3'
miRNA:   3'- gauaaUUUGUCG--------------UCGGCGgCGCGGUG- -5'
5582 3' -53.5 NC_001806.1 + 27270 0.76 0.473786
Target:  5'- aCUGgccaauCGGCGGCCGCCaGCGCgGCg -3'
miRNA:   3'- -GAUaauuu-GUCGUCGGCGG-CGCGgUG- -5'
5582 3' -53.5 NC_001806.1 + 144183 0.83 0.204256
Target:  5'- ------cACGGCGGCCGCCGCaGCCGCc -3'
miRNA:   3'- gauaauuUGUCGUCGGCGGCG-CGGUG- -5'
5582 3' -53.5 NC_001806.1 + 23144 0.8 0.289273
Target:  5'- cCUGccGAGCuccGCGGCCGCCGCcGCCGCg -3'
miRNA:   3'- -GAUaaUUUGu--CGUCGGCGGCG-CGGUG- -5'
5582 3' -53.5 NC_001806.1 + 2661 0.79 0.341272
Target:  5'- ----aGGGCGGCGGCCGCgGgCGCCGCc -3'
miRNA:   3'- gauaaUUUGUCGUCGGCGgC-GCGGUG- -5'
5582 3' -53.5 NC_001806.1 + 22452 0.79 0.341272
Target:  5'- ------cGCGGCGGCCGCCGUgGCCAUg -3'
miRNA:   3'- gauaauuUGUCGUCGGCGGCG-CGGUG- -5'
5582 3' -53.5 NC_001806.1 + 131877 0.79 0.34923
Target:  5'- --------uGGCGGCCGcCCGCGCCGCg -3'
miRNA:   3'- gauaauuugUCGUCGGC-GGCGCGGUG- -5'
5582 3' -53.5 NC_001806.1 + 3799 0.78 0.390972
Target:  5'- ------cACGGCGGCCGCCGCGUgCGCc -3'
miRNA:   3'- gauaauuUGUCGUCGGCGGCGCG-GUG- -5'
5582 3' -53.5 NC_001806.1 + 148021 0.78 0.390972
Target:  5'- -----uGGCGGgAGCCGCCGCcGCCGCu -3'
miRNA:   3'- gauaauUUGUCgUCGGCGGCG-CGGUG- -5'
5582 3' -53.5 NC_001806.1 + 76517 0.77 0.445162
Target:  5'- ----cAAACAGCAGCgCGCCGaaGCCACc -3'
miRNA:   3'- gauaaUUUGUCGUCG-GCGGCg-CGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.