miRNA display CGI


Results 41 - 60 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5585 5' -59.9 NC_001806.1 + 41706 0.68 0.605739
Target:  5'- cCGCcgUGUCCuccCCGGGAcuGGCGggcgcaaacgcGGGCCa -3'
miRNA:   3'- -GCGagACAGGu--GGCCCU--UCGU-----------CCCGG- -5'
5585 5' -59.9 NC_001806.1 + 50696 0.69 0.58594
Target:  5'- gCGCcauUCUGgCCGCCGGGcucguccuGCAGcGGCUg -3'
miRNA:   3'- -GCG---AGACaGGUGGCCCuu------CGUC-CCGG- -5'
5585 5' -59.9 NC_001806.1 + 85348 0.69 0.576085
Target:  5'- aGCUUUuuuucGUCCACaCGauccugcgcGGAGGCGGGGCg -3'
miRNA:   3'- gCGAGA-----CAGGUG-GC---------CCUUCGUCCCGg -5'
5585 5' -59.9 NC_001806.1 + 146820 0.69 0.576085
Target:  5'- cCGCg--GUCU--CGGGGAGCAGGGUg -3'
miRNA:   3'- -GCGagaCAGGugGCCCUUCGUCCCGg -5'
5585 5' -59.9 NC_001806.1 + 26702 0.69 0.576085
Target:  5'- gGCg-UGggC-CCGGGggGCGGGGCUg -3'
miRNA:   3'- gCGagACagGuGGCCCuuCGUCCCGG- -5'
5585 5' -59.9 NC_001806.1 + 148189 0.69 0.566268
Target:  5'- gCGCggggcGUCCGgCGGGggGC-GGGCg -3'
miRNA:   3'- -GCGaga--CAGGUgGCCCuuCGuCCCGg -5'
5585 5' -59.9 NC_001806.1 + 148892 0.69 0.556494
Target:  5'- cCGUgCUGUCCGCCucGGAGGCGGaGUCg -3'
miRNA:   3'- -GCGaGACAGGUGGc-CCUUCGUCcCGG- -5'
5585 5' -59.9 NC_001806.1 + 5066 0.7 0.5371
Target:  5'- cCGCUCgucgcgGUCUggGCuCGGGGugGGCGGcGGCCc -3'
miRNA:   3'- -GCGAGa-----CAGG--UG-GCCCU--UCGUC-CCGG- -5'
5585 5' -59.9 NC_001806.1 + 59039 0.7 0.527491
Target:  5'- aCGCguccUCCACgGgGGAGGCGgGGGCCa -3'
miRNA:   3'- -GCGagacAGGUGgC-CCUUCGU-CCCGG- -5'
5585 5' -59.9 NC_001806.1 + 147674 0.7 0.517945
Target:  5'- gGCUCcGcCCcggggGCCGGGgcGCGGGGgCg -3'
miRNA:   3'- gCGAGaCaGG-----UGGCCCuuCGUCCCgG- -5'
5585 5' -59.9 NC_001806.1 + 4276 0.7 0.517945
Target:  5'- aGCUCgacCCGCCGGGGcuGCccGGCCg -3'
miRNA:   3'- gCGAGacaGGUGGCCCUu-CGucCCGG- -5'
5585 5' -59.9 NC_001806.1 + 5942 0.7 0.50847
Target:  5'- gGCgg-GaCCGCCccaaGGggGCGGGGCCg -3'
miRNA:   3'- gCGagaCaGGUGGc---CCuuCGUCCCGG- -5'
5585 5' -59.9 NC_001806.1 + 78321 0.71 0.471348
Target:  5'- gCGCUCgGUCCccgaGCUGGGAaccgAGCGcGGcGCCg -3'
miRNA:   3'- -GCGAGaCAGG----UGGCCCU----UCGU-CC-CGG- -5'
5585 5' -59.9 NC_001806.1 + 46097 0.71 0.462281
Target:  5'- gGUUUUGUCCGgcCCGGGGccugcGCGGGcGCCu -3'
miRNA:   3'- gCGAGACAGGU--GGCCCUu----CGUCC-CGG- -5'
5585 5' -59.9 NC_001806.1 + 62216 0.71 0.447969
Target:  5'- gCGCUCUgGUCCguaagggccgucagaGCgGGGGAGagggcuGGGGCCg -3'
miRNA:   3'- -GCGAGA-CAGG---------------UGgCCCUUCg-----UCCCGG- -5'
5585 5' -59.9 NC_001806.1 + 2625 0.71 0.444429
Target:  5'- aGCUCgg-CCACggcgcgCGGGGAGCAGuaGGCCu -3'
miRNA:   3'- gCGAGacaGGUG------GCCCUUCGUC--CCGG- -5'
5585 5' -59.9 NC_001806.1 + 3305 0.71 0.444429
Target:  5'- uGCggCgg-CgGCgGGGAAGCGGGGCCc -3'
miRNA:   3'- gCGa-GacaGgUGgCCCUUCGUCCCGG- -5'
5585 5' -59.9 NC_001806.1 + 125270 0.72 0.417544
Target:  5'- aGCa-UGUCCGCCGGGAcgcaccgugacuaAGCGucccuGGGCCc -3'
miRNA:   3'- gCGagACAGGUGGCCCU-------------UCGU-----CCCGG- -5'
5585 5' -59.9 NC_001806.1 + 27833 0.72 0.409926
Target:  5'- gCGC-CggguugGUCC-CCGGGGA-CGGGGCCg -3'
miRNA:   3'- -GCGaGa-----CAGGuGGCCCUUcGUCCCGG- -5'
5585 5' -59.9 NC_001806.1 + 113373 0.73 0.369222
Target:  5'- gCGCUaUGUCCGgcggcguuCCGGGAcGCccGGGGCCu -3'
miRNA:   3'- -GCGAgACAGGU--------GGCCCUuCG--UCCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.