miRNA display CGI


Results 41 - 60 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5586 3' -56.3 NC_001806.1 + 66420 0.67 0.837837
Target:  5'- -aGGUGCGUGCGGUGGGGcgcccccgcaGGuCCGGCu -3'
miRNA:   3'- cgCCGUGCGCGCUAUCUCa---------UC-GGCUG- -5'
5586 3' -56.3 NC_001806.1 + 133679 0.67 0.835375
Target:  5'- gGCGGCGCGuCGUgcgugucugucccgGAggcggGGAGUcGGUCGGCg -3'
miRNA:   3'- -CGCCGUGC-GCG--------------CUa----UCUCA-UCGGCUG- -5'
5586 3' -56.3 NC_001806.1 + 33781 0.68 0.829566
Target:  5'- gGCGGC-CGcCGUGuucGGucucGGUAGCCGGCc -3'
miRNA:   3'- -CGCCGuGC-GCGCua-UC----UCAUCGGCUG- -5'
5586 3' -56.3 NC_001806.1 + 26820 0.68 0.821117
Target:  5'- uGCGacGCGCGgGCGGggaGGGGgcGCCGGa -3'
miRNA:   3'- -CGC--CGUGCgCGCUa--UCUCauCGGCUg -5'
5586 3' -56.3 NC_001806.1 + 89777 0.68 0.821117
Target:  5'- cGCGGgGCGUGgGAggggcUGGGGcGGaCCGGCa -3'
miRNA:   3'- -CGCCgUGCGCgCU-----AUCUCaUC-GGCUG- -5'
5586 3' -56.3 NC_001806.1 + 92902 0.68 0.821117
Target:  5'- uGCGGC-CGCGUGGUccgcgcAGGGcggGGCgGGCc -3'
miRNA:   3'- -CGCCGuGCGCGCUA------UCUCa--UCGgCUG- -5'
5586 3' -56.3 NC_001806.1 + 100821 0.68 0.821117
Target:  5'- gGUGGCGaaaggGCGCGAUGGcGgcGUCGAg -3'
miRNA:   3'- -CGCCGUg----CGCGCUAUCuCauCGGCUg -5'
5586 3' -56.3 NC_001806.1 + 113245 0.68 0.818549
Target:  5'- aGCuGCACccCGCGuucgacuucuuugugGGGGUGGCCGACg -3'
miRNA:   3'- -CGcCGUGc-GCGCua-------------UCUCAUCGGCUG- -5'
5586 3' -56.3 NC_001806.1 + 53879 0.68 0.812497
Target:  5'- uUGGCAgcCGCGCGGggaucAGGGUcGCCGGg -3'
miRNA:   3'- cGCCGU--GCGCGCUa----UCUCAuCGGCUg -5'
5586 3' -56.3 NC_001806.1 + 51290 0.68 0.803714
Target:  5'- uGCGGCugGCGCGGU------GCCuGACg -3'
miRNA:   3'- -CGCCGugCGCGCUAucucauCGG-CUG- -5'
5586 3' -56.3 NC_001806.1 + 42639 0.68 0.794777
Target:  5'- gGCGGCGuCGCGUccGGUGcGGG-GGCUGGCg -3'
miRNA:   3'- -CGCCGU-GCGCG--CUAU-CUCaUCGGCUG- -5'
5586 3' -56.3 NC_001806.1 + 100308 0.68 0.793875
Target:  5'- uGCGGCugGgGU--UGGGGcgcggcaUGGCCGGCg -3'
miRNA:   3'- -CGCCGugCgCGcuAUCUC-------AUCGGCUG- -5'
5586 3' -56.3 NC_001806.1 + 99612 0.68 0.792068
Target:  5'- aGgGGCGCGCGUcugGGUGGAaggacaugggggcgGUGGCgGGCc -3'
miRNA:   3'- -CgCCGUGCGCG---CUAUCU--------------CAUCGgCUG- -5'
5586 3' -56.3 NC_001806.1 + 2510 0.68 0.785695
Target:  5'- cGCGGCcUGgGCGGcGGGGgcgGGcCCGGCg -3'
miRNA:   3'- -CGCCGuGCgCGCUaUCUCa--UC-GGCUG- -5'
5586 3' -56.3 NC_001806.1 + 140027 0.69 0.776475
Target:  5'- cGCGGCGaaaGCGCcc-GGAGcgccacGGCCGGCa -3'
miRNA:   3'- -CGCCGUg--CGCGcuaUCUCa-----UCGGCUG- -5'
5586 3' -56.3 NC_001806.1 + 24664 0.69 0.776475
Target:  5'- cGUGGCGCugggGCGCGAggcGGUGcgcGCCGGCc -3'
miRNA:   3'- -CGCCGUG----CGCGCUaucUCAU---CGGCUG- -5'
5586 3' -56.3 NC_001806.1 + 15085 0.69 0.776475
Target:  5'- uCGGgGCGCGCGggGGAGUuGuuGGg -3'
miRNA:   3'- cGCCgUGCGCGCuaUCUCAuCggCUg -5'
5586 3' -56.3 NC_001806.1 + 69138 0.69 0.767127
Target:  5'- aUGGCGCGCGUGcggacGGAcGUGGCCGu- -3'
miRNA:   3'- cGCCGUGCGCGCua---UCU-CAUCGGCug -5'
5586 3' -56.3 NC_001806.1 + 39540 0.69 0.767127
Target:  5'- uGCGGCcUGCGUaguucaagaGGUAG-GUGGCCGGg -3'
miRNA:   3'- -CGCCGuGCGCG---------CUAUCuCAUCGGCUg -5'
5586 3' -56.3 NC_001806.1 + 109475 0.69 0.757659
Target:  5'- aGUGGCugGCGUGGggcGGGgauGCCGuCa -3'
miRNA:   3'- -CGCCGugCGCGCUau-CUCau-CGGCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.