miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5586 3' -56.3 NC_001806.1 + 57143 0.66 0.879122
Target:  5'- cGCGGUgggcCGCGCGAggggagGGGGUgcgcgcauaaagcccAGCaCGGCg -3'
miRNA:   3'- -CGCCGu---GCGCGCUa-----UCUCA---------------UCG-GCUG- -5'
5586 3' -56.3 NC_001806.1 + 95657 0.66 0.879122
Target:  5'- uGCGGCGCGCGCgcgcuucugcgcccuGAcGGcGGgcGCgGGCa -3'
miRNA:   3'- -CGCCGUGCGCG---------------CUaUC-UCauCGgCUG- -5'
5586 3' -56.3 NC_001806.1 + 139803 0.66 0.876272
Target:  5'- aCGGCAccCGCGCGAUcauGGUacggGGCCGGg -3'
miRNA:   3'- cGCCGU--GCGCGCUAuc-UCA----UCGGCUg -5'
5586 3' -56.3 NC_001806.1 + 71942 0.66 0.876272
Target:  5'- aGUGGaCGCGCGCGAccgcGGGcccugGGCCGcCg -3'
miRNA:   3'- -CGCC-GUGCGCGCUau--CUCa----UCGGCuG- -5'
5586 3' -56.3 NC_001806.1 + 45283 0.66 0.875554
Target:  5'- aGCGGCGggagacgcgggccCGCGCGG-GGAGccGcCCGGCg -3'
miRNA:   3'- -CGCCGU-------------GCGCGCUaUCUCauC-GGCUG- -5'
5586 3' -56.3 NC_001806.1 + 57011 0.67 0.868996
Target:  5'- gGCGGCGCccaGUGCcaggcacuGGGUGGCCGGg -3'
miRNA:   3'- -CGCCGUG---CGCGcuau----CUCAUCGGCUg -5'
5586 3' -56.3 NC_001806.1 + 151264 0.67 0.868996
Target:  5'- -gGGCccACGCcggGCGGUGGGGgccggGGCCGGg -3'
miRNA:   3'- cgCCG--UGCG---CGCUAUCUCa----UCGGCUg -5'
5586 3' -56.3 NC_001806.1 + 3131 0.67 0.868996
Target:  5'- cGCGGCA-GCGCGGggcccAGGGcc-CCGGCg -3'
miRNA:   3'- -CGCCGUgCGCGCUa----UCUCaucGGCUG- -5'
5586 3' -56.3 NC_001806.1 + 67765 0.67 0.868996
Target:  5'- cGCGGCuacCGCcucCGGUGGGuuGUguuGGCCGACu -3'
miRNA:   3'- -CGCCGu--GCGc--GCUAUCU--CA---UCGGCUG- -5'
5586 3' -56.3 NC_001806.1 + 78349 0.67 0.868996
Target:  5'- cGCGGCGC-CGCGcUGGGaaAGCUGAg -3'
miRNA:   3'- -CGCCGUGcGCGCuAUCUcaUCGGCUg -5'
5586 3' -56.3 NC_001806.1 + 93446 0.67 0.868996
Target:  5'- cGCGGCaACG-GCGA----GUGGUCGACg -3'
miRNA:   3'- -CGCCG-UGCgCGCUaucuCAUCGGCUG- -5'
5586 3' -56.3 NC_001806.1 + 5589 0.67 0.868996
Target:  5'- cCGGCACGC-CGggGGcccGUGGCCG-Cg -3'
miRNA:   3'- cGCCGUGCGcGCuaUCu--CAUCGGCuG- -5'
5586 3' -56.3 NC_001806.1 + 50018 0.67 0.868257
Target:  5'- -aGGCGCGCGggucugaccuggaCGAcAGGGcGGCCGAg -3'
miRNA:   3'- cgCCGUGCGC-------------GCUaUCUCaUCGGCUg -5'
5586 3' -56.3 NC_001806.1 + 117746 0.67 0.861509
Target:  5'- uGUGuGCACGUGCG-UGGcGUGG-CGACg -3'
miRNA:   3'- -CGC-CGUGCGCGCuAUCuCAUCgGCUG- -5'
5586 3' -56.3 NC_001806.1 + 78642 0.67 0.853815
Target:  5'- cGCGGCGCGCGUuacggccAUGGAccugGU-GCUGGCg -3'
miRNA:   3'- -CGCCGUGCGCGc------UAUCU----CAuCGGCUG- -5'
5586 3' -56.3 NC_001806.1 + 54294 0.67 0.853815
Target:  5'- aGCGGUggGCGgGAUAGAGgggGGaCCa-- -3'
miRNA:   3'- -CGCCGugCGCgCUAUCUCa--UC-GGcug -5'
5586 3' -56.3 NC_001806.1 + 132148 0.67 0.845923
Target:  5'- gGCGGCGCGCGUugccGAGcaucCCGACg -3'
miRNA:   3'- -CGCCGUGCGCGcuauCUCauc-GGCUG- -5'
5586 3' -56.3 NC_001806.1 + 151179 0.67 0.837837
Target:  5'- cGCGGUgACGCGCaGGcGGAGggcgaGGCgCGGCg -3'
miRNA:   3'- -CGCCG-UGCGCG-CUaUCUCa----UCG-GCUG- -5'
5586 3' -56.3 NC_001806.1 + 34317 0.67 0.837837
Target:  5'- gGCGGCGCGC-CGGacGGGgcGCUGGa -3'
miRNA:   3'- -CGCCGUGCGcGCUauCUCauCGGCUg -5'
5586 3' -56.3 NC_001806.1 + 367 0.67 0.837837
Target:  5'- uGCGcGCGCGCGCGcccgcgGGGGgcccgGGCUGcCa -3'
miRNA:   3'- -CGC-CGUGCGCGCua----UCUCa----UCGGCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.