miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5586 3' -56.3 NC_001806.1 + 34317 0.67 0.837837
Target:  5'- gGCGGCGCGC-CGGacGGGgcGCUGGa -3'
miRNA:   3'- -CGCCGUGCGcGCUauCUCauCGGCUg -5'
5586 3' -56.3 NC_001806.1 + 37509 0.75 0.4069
Target:  5'- cCGGCAaaaGUGCGAUAGAGgcucgGGCCGuggGCg -3'
miRNA:   3'- cGCCGUg--CGCGCUAUCUCa----UCGGC---UG- -5'
5586 3' -56.3 NC_001806.1 + 37990 0.66 0.903168
Target:  5'- gGgGGCACGC-CGGcGGGGgu-CCGACa -3'
miRNA:   3'- -CgCCGUGCGcGCUaUCUCaucGGCUG- -5'
5586 3' -56.3 NC_001806.1 + 39540 0.69 0.767127
Target:  5'- uGCGGCcUGCGUaguucaagaGGUAG-GUGGCCGGg -3'
miRNA:   3'- -CGCCGuGCGCG---------CUAUCuCAUCGGCUg -5'
5586 3' -56.3 NC_001806.1 + 42639 0.68 0.794777
Target:  5'- gGCGGCGuCGCGUccGGUGcGGG-GGCUGGCg -3'
miRNA:   3'- -CGCCGU-GCGCG--CUAU-CUCaUCGGCUG- -5'
5586 3' -56.3 NC_001806.1 + 45283 0.66 0.875554
Target:  5'- aGCGGCGggagacgcgggccCGCGCGG-GGAGccGcCCGGCg -3'
miRNA:   3'- -CGCCGU-------------GCGCGCUaUCUCauC-GGCUG- -5'
5586 3' -56.3 NC_001806.1 + 50018 0.67 0.868257
Target:  5'- -aGGCGCGCGggucugaccuggaCGAcAGGGcGGCCGAg -3'
miRNA:   3'- cgCCGUGCGC-------------GCUaUCUCaUCGGCUg -5'
5586 3' -56.3 NC_001806.1 + 50685 0.66 0.89017
Target:  5'- gGCGGcCACGCGCGccauucUGGCCGcCg -3'
miRNA:   3'- -CGCC-GUGCGCGCuaucucAUCGGCuG- -5'
5586 3' -56.3 NC_001806.1 + 51290 0.68 0.803714
Target:  5'- uGCGGCugGCGCGGU------GCCuGACg -3'
miRNA:   3'- -CGCCGugCGCGCUAucucauCGG-CUG- -5'
5586 3' -56.3 NC_001806.1 + 53879 0.68 0.812497
Target:  5'- uUGGCAgcCGCGCGGggaucAGGGUcGCCGGg -3'
miRNA:   3'- cGCCGU--GCGCGCUa----UCUCAuCGGCUg -5'
5586 3' -56.3 NC_001806.1 + 54294 0.67 0.853815
Target:  5'- aGCGGUggGCGgGAUAGAGgggGGaCCa-- -3'
miRNA:   3'- -CGCCGugCGCgCUAUCUCa--UC-GGcug -5'
5586 3' -56.3 NC_001806.1 + 56622 0.66 0.883332
Target:  5'- -gGGC-CGCGCGAcccUGGccGGUgcgaccucaucGGCCGGCg -3'
miRNA:   3'- cgCCGuGCGCGCU---AUC--UCA-----------UCGGCUG- -5'
5586 3' -56.3 NC_001806.1 + 57011 0.67 0.868996
Target:  5'- gGCGGCGCccaGUGCcaggcacuGGGUGGCCGGg -3'
miRNA:   3'- -CGCCGUG---CGCGcuau----CUCAUCGGCUg -5'
5586 3' -56.3 NC_001806.1 + 57143 0.66 0.879122
Target:  5'- cGCGGUgggcCGCGCGAggggagGGGGUgcgcgcauaaagcccAGCaCGGCg -3'
miRNA:   3'- -CGCCGu---GCGCGCUa-----UCUCA---------------UCG-GCUG- -5'
5586 3' -56.3 NC_001806.1 + 66420 0.67 0.837837
Target:  5'- -aGGUGCGUGCGGUGGGGcgcccccgcaGGuCCGGCu -3'
miRNA:   3'- cgCCGUGCGCGCUAUCUCa---------UC-GGCUG- -5'
5586 3' -56.3 NC_001806.1 + 67219 0.69 0.738402
Target:  5'- gGCGGgGCGCGCuGGUGGgccaGGUgaggcaGGUCGGCg -3'
miRNA:   3'- -CGCCgUGCGCG-CUAUC----UCA------UCGGCUG- -5'
5586 3' -56.3 NC_001806.1 + 67765 0.67 0.868996
Target:  5'- cGCGGCuacCGCcucCGGUGGGuuGUguuGGCCGACu -3'
miRNA:   3'- -CGCCGu--GCGc--GCUAUCU--CA---UCGGCUG- -5'
5586 3' -56.3 NC_001806.1 + 69138 0.69 0.767127
Target:  5'- aUGGCGCGCGUGcggacGGAcGUGGCCGu- -3'
miRNA:   3'- cGCCGUGCGCGCua---UCU-CAUCGGCug -5'
5586 3' -56.3 NC_001806.1 + 69694 0.7 0.687804
Target:  5'- uGCGGCGgGCGCucguGggGGAGUuugagacGGCCGAg -3'
miRNA:   3'- -CGCCGUgCGCG----CuaUCUCA-------UCGGCUg -5'
5586 3' -56.3 NC_001806.1 + 70855 0.72 0.597297
Target:  5'- cGCGGCGCGgcCGCGGgacccgAGcccGUGGCCGAg -3'
miRNA:   3'- -CGCCGUGC--GCGCUa-----UCu--CAUCGGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.