miRNA display CGI


Results 1 - 20 of 84 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5586 3' -56.3 NC_001806.1 + 367 0.67 0.837837
Target:  5'- uGCGcGCGCGCGCGcccgcgGGGGgcccgGGCUGcCa -3'
miRNA:   3'- -CGC-CGUGCGCGCua----UCUCa----UCGGCuG- -5'
5586 3' -56.3 NC_001806.1 + 1546 0.71 0.638046
Target:  5'- cGCGGCcCGCGCcaccGGGccgGGCCGGCg -3'
miRNA:   3'- -CGCCGuGCGCGcuauCUCa--UCGGCUG- -5'
5586 3' -56.3 NC_001806.1 + 1878 0.7 0.698859
Target:  5'- cGCGGCcuccacGCGCGCGA-AGAcccccgGGCCGAa -3'
miRNA:   3'- -CGCCG------UGCGCGCUaUCUca----UCGGCUg -5'
5586 3' -56.3 NC_001806.1 + 2510 0.68 0.785695
Target:  5'- cGCGGCcUGgGCGGcGGGGgcgGGcCCGGCg -3'
miRNA:   3'- -CGCCGuGCgCGCUaUCUCa--UC-GGCUG- -5'
5586 3' -56.3 NC_001806.1 + 2847 0.69 0.748081
Target:  5'- gGgGGCGCggGCGCGGggagGGGGgcGCgGGCg -3'
miRNA:   3'- -CgCCGUG--CGCGCUa---UCUCauCGgCUG- -5'
5586 3' -56.3 NC_001806.1 + 3131 0.67 0.868996
Target:  5'- cGCGGCA-GCGCGGggcccAGGGcc-CCGGCg -3'
miRNA:   3'- -CGCCGUgCGCGCUa----UCUCaucGGCUG- -5'
5586 3' -56.3 NC_001806.1 + 3517 0.66 0.901277
Target:  5'- gGCGGCGuCGgggucgucgcccccCGCGggGGAGgcgGGCgCGGCg -3'
miRNA:   3'- -CGCCGU-GC--------------GCGCuaUCUCa--UCG-GCUG- -5'
5586 3' -56.3 NC_001806.1 + 5589 0.67 0.868996
Target:  5'- cCGGCACGC-CGggGGcccGUGGCCG-Cg -3'
miRNA:   3'- cGCCGUGCGcGCuaUCu--CAUCGGCuG- -5'
5586 3' -56.3 NC_001806.1 + 15085 0.69 0.776475
Target:  5'- uCGGgGCGCGCGggGGAGUuGuuGGg -3'
miRNA:   3'- cGCCgUGCGCGCuaUCUCAuCggCUg -5'
5586 3' -56.3 NC_001806.1 + 15737 0.71 0.668585
Target:  5'- cCGGC-CGCGCGggAGcGGUAGCgCGAg -3'
miRNA:   3'- cGCCGuGCGCGCuaUC-UCAUCG-GCUg -5'
5586 3' -56.3 NC_001806.1 + 21918 0.73 0.556949
Target:  5'- -gGGCcCGCGCGGc--GGUGGCCGGCc -3'
miRNA:   3'- cgCCGuGCGCGCUaucUCAUCGGCUG- -5'
5586 3' -56.3 NC_001806.1 + 24664 0.69 0.776475
Target:  5'- cGUGGCGCugggGCGCGAggcGGUGcgcGCCGGCc -3'
miRNA:   3'- -CGCCGUG----CGCGCUaucUCAU---CGGCUG- -5'
5586 3' -56.3 NC_001806.1 + 24973 0.66 0.896784
Target:  5'- gGCGGCGCGUuCGAgggggacGGGGUgcuguaacgGGCCGGg -3'
miRNA:   3'- -CGCCGUGCGcGCUa------UCUCA---------UCGGCUg -5'
5586 3' -56.3 NC_001806.1 + 25518 0.72 0.597297
Target:  5'- cGCGGgACGCGCcggGGAGggcuggGGCCGGg -3'
miRNA:   3'- -CGCCgUGCGCGcuaUCUCa-----UCGGCUg -5'
5586 3' -56.3 NC_001806.1 + 25924 0.73 0.537059
Target:  5'- gGCGuGCGCGCGCGcggcgggcGUGGGGgcggGGCCG-Cg -3'
miRNA:   3'- -CGC-CGUGCGCGC--------UAUCUCa---UCGGCuG- -5'
5586 3' -56.3 NC_001806.1 + 26820 0.68 0.821117
Target:  5'- uGCGacGCGCGgGCGGggaGGGGgcGCCGGa -3'
miRNA:   3'- -CGC--CGUGCgCGCUa--UCUCauCGGCUg -5'
5586 3' -56.3 NC_001806.1 + 26977 0.66 0.883332
Target:  5'- cGCGGCuCGUGgGcccgcGAGcgGGCCGACc -3'
miRNA:   3'- -CGCCGuGCGCgCuau--CUCa-UCGGCUG- -5'
5586 3' -56.3 NC_001806.1 + 30389 0.71 0.668585
Target:  5'- -gGGCGCGUGCGAcGGuGgcGCgCGGCu -3'
miRNA:   3'- cgCCGUGCGCGCUaUCuCauCG-GCUG- -5'
5586 3' -56.3 NC_001806.1 + 33591 0.66 0.881938
Target:  5'- cGCgGGCACGCGCGcccuuaaUGGaCCGGCg -3'
miRNA:   3'- -CG-CCGUGCGCGCuaucuc-AUC-GGCUG- -5'
5586 3' -56.3 NC_001806.1 + 33781 0.68 0.829566
Target:  5'- gGCGGC-CGcCGUGuucGGucucGGUAGCCGGCc -3'
miRNA:   3'- -CGCCGuGC-GCGCua-UC----UCAUCGGCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.