Results 1 - 20 of 84 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5586 | 3' | -56.3 | NC_001806.1 | + | 57143 | 0.66 | 0.879122 |
Target: 5'- cGCGGUgggcCGCGCGAggggagGGGGUgcgcgcauaaagcccAGCaCGGCg -3' miRNA: 3'- -CGCCGu---GCGCGCUa-----UCUCA---------------UCG-GCUG- -5' |
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5586 | 3' | -56.3 | NC_001806.1 | + | 139803 | 0.66 | 0.876272 |
Target: 5'- aCGGCAccCGCGCGAUcauGGUacggGGCCGGg -3' miRNA: 3'- cGCCGU--GCGCGCUAuc-UCA----UCGGCUg -5' |
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5586 | 3' | -56.3 | NC_001806.1 | + | 71942 | 0.66 | 0.876272 |
Target: 5'- aGUGGaCGCGCGCGAccgcGGGcccugGGCCGcCg -3' miRNA: 3'- -CGCC-GUGCGCGCUau--CUCa----UCGGCuG- -5' |
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5586 | 3' | -56.3 | NC_001806.1 | + | 26977 | 0.66 | 0.883332 |
Target: 5'- cGCGGCuCGUGgGcccgcGAGcgGGCCGACc -3' miRNA: 3'- -CGCCGuGCGCgCuau--CUCa-UCGGCUG- -5' |
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5586 | 3' | -56.3 | NC_001806.1 | + | 45283 | 0.66 | 0.875554 |
Target: 5'- aGCGGCGggagacgcgggccCGCGCGG-GGAGccGcCCGGCg -3' miRNA: 3'- -CGCCGU-------------GCGCGCUaUCUCauC-GGCUG- -5' |
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5586 | 3' | -56.3 | NC_001806.1 | + | 50685 | 0.66 | 0.89017 |
Target: 5'- gGCGGcCACGCGCGccauucUGGCCGcCg -3' miRNA: 3'- -CGCC-GUGCGCGCuaucucAUCGGCuG- -5' |
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5586 | 3' | -56.3 | NC_001806.1 | + | 56622 | 0.66 | 0.883332 |
Target: 5'- -gGGC-CGCGCGAcccUGGccGGUgcgaccucaucGGCCGGCg -3' miRNA: 3'- cgCCGuGCGCGCU---AUC--UCA-----------UCGGCUG- -5' |
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5586 | 3' | -56.3 | NC_001806.1 | + | 3517 | 0.66 | 0.901277 |
Target: 5'- gGCGGCGuCGgggucgucgcccccCGCGggGGAGgcgGGCgCGGCg -3' miRNA: 3'- -CGCCGU-GC--------------GCGCuaUCUCa--UCG-GCUG- -5' |
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5586 | 3' | -56.3 | NC_001806.1 | + | 112573 | 0.66 | 0.89017 |
Target: 5'- aCGGCGCuCGUGAUGGGcaaGGCCGuGCg -3' miRNA: 3'- cGCCGUGcGCGCUAUCUca-UCGGC-UG- -5' |
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5586 | 3' | -56.3 | NC_001806.1 | + | 95657 | 0.66 | 0.879122 |
Target: 5'- uGCGGCGCGCGCgcgcuucugcgcccuGAcGGcGGgcGCgGGCa -3' miRNA: 3'- -CGCCGUGCGCG---------------CUaUC-UCauCGgCUG- -5' |
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5586 | 3' | -56.3 | NC_001806.1 | + | 119552 | 0.66 | 0.896784 |
Target: 5'- aGCGGgG-GCGCcAUGGGGgcGGCUGACg -3' miRNA: 3'- -CGCCgUgCGCGcUAUCUCa-UCGGCUG- -5' |
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5586 | 3' | -56.3 | NC_001806.1 | + | 122359 | 0.66 | 0.883332 |
Target: 5'- gGUGGCGCGCugGCGGaAGuGgcGCaCGGCc -3' miRNA: 3'- -CGCCGUGCG--CGCUaUCuCauCG-GCUG- -5' |
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5586 | 3' | -56.3 | NC_001806.1 | + | 24973 | 0.66 | 0.896784 |
Target: 5'- gGCGGCGCGUuCGAgggggacGGGGUgcuguaacgGGCCGGg -3' miRNA: 3'- -CGCCGUGCGcGCUa------UCUCA---------UCGGCUg -5' |
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5586 | 3' | -56.3 | NC_001806.1 | + | 152077 | 0.66 | 0.896784 |
Target: 5'- uGCGcGCGCGCGCGcccgcGGGgGGCCcgGGCu -3' miRNA: 3'- -CGC-CGUGCGCGCuau--CUCaUCGG--CUG- -5' |
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5586 | 3' | -56.3 | NC_001806.1 | + | 73539 | 0.66 | 0.90932 |
Target: 5'- cUGGCcuccACGCGCcu--GAGccUGGCCGACg -3' miRNA: 3'- cGCCG----UGCGCGcuauCUC--AUCGGCUG- -5' |
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5586 | 3' | -56.3 | NC_001806.1 | + | 33591 | 0.66 | 0.881938 |
Target: 5'- cGCgGGCACGCGCGcccuuaaUGGaCCGGCg -3' miRNA: 3'- -CG-CCGUGCGCGCuaucuc-AUC-GGCUG- -5' |
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5586 | 3' | -56.3 | NC_001806.1 | + | 37990 | 0.66 | 0.903168 |
Target: 5'- gGgGGCACGC-CGGcGGGGgu-CCGACa -3' miRNA: 3'- -CgCCGUGCGcGCUaUCUCaucGGCUG- -5' |
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5586 | 3' | -56.3 | NC_001806.1 | + | 151562 | 0.66 | 0.89017 |
Target: 5'- gGCGGCGgGggcCGCGAUGGcGgcGgCGGCg -3' miRNA: 3'- -CGCCGUgC---GCGCUAUCuCauCgGCUG- -5' |
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5586 | 3' | -56.3 | NC_001806.1 | + | 122247 | 0.66 | 0.896784 |
Target: 5'- uGCGG-AUGUGCGcc-GuGUAGCCGAUc -3' miRNA: 3'- -CGCCgUGCGCGCuauCuCAUCGGCUG- -5' |
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5586 | 3' | -56.3 | NC_001806.1 | + | 150995 | 0.66 | 0.883332 |
Target: 5'- cGCGGCGCGC-CaGgcGGGcGGCCGAg -3' miRNA: 3'- -CGCCGUGCGcGcUauCUCaUCGGCUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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