Results 1 - 20 of 84 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5586 | 3' | -56.3 | NC_001806.1 | + | 120930 | 0.91 | 0.044512 |
Target: 5'- cGCGGCACGCGCGAUAGAGUcGaCGACc -3' miRNA: 3'- -CGCCGUGCGCGCUAUCUCAuCgGCUG- -5' |
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5586 | 3' | -56.3 | NC_001806.1 | + | 139225 | 0.76 | 0.389948 |
Target: 5'- gGCGGCACGCGaCGGccaacGUGGCCGAg -3' miRNA: 3'- -CGCCGUGCGC-GCUaucu-CAUCGGCUg -5' |
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5586 | 3' | -56.3 | NC_001806.1 | + | 37509 | 0.75 | 0.4069 |
Target: 5'- cCGGCAaaaGUGCGAUAGAGgcucgGGCCGuggGCg -3' miRNA: 3'- cGCCGUg--CGCGCUAUCUCa----UCGGC---UG- -5' |
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5586 | 3' | -56.3 | NC_001806.1 | + | 95280 | 0.75 | 0.442149 |
Target: 5'- cGCGuGCugGCGCGcAUGGGGgcggggGGCgCGGCg -3' miRNA: 3'- -CGC-CGugCGCGC-UAUCUCa-----UCG-GCUG- -5' |
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5586 | 3' | -56.3 | NC_001806.1 | + | 98237 | 0.74 | 0.488525 |
Target: 5'- uGCGGCugACGCGCGAUGcGAucgAGCCGuGCa -3' miRNA: 3'- -CGCCG--UGCGCGCUAU-CUca-UCGGC-UG- -5' |
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5586 | 3' | -56.3 | NC_001806.1 | + | 25924 | 0.73 | 0.537059 |
Target: 5'- gGCGuGCGCGCGCGcggcgggcGUGGGGgcggGGCCG-Cg -3' miRNA: 3'- -CGC-CGUGCGCGC--------UAUCUCa---UCGGCuG- -5' |
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5586 | 3' | -56.3 | NC_001806.1 | + | 21918 | 0.73 | 0.556949 |
Target: 5'- -gGGCcCGCGCGGc--GGUGGCCGGCc -3' miRNA: 3'- cgCCGuGCGCGCUaucUCAUCGGCUG- -5' |
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5586 | 3' | -56.3 | NC_001806.1 | + | 142151 | 0.72 | 0.587155 |
Target: 5'- gGCGGCGucccguCGCGgGGUGGGGU--CCGACg -3' miRNA: 3'- -CGCCGU------GCGCgCUAUCUCAucGGCUG- -5' |
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5586 | 3' | -56.3 | NC_001806.1 | + | 70855 | 0.72 | 0.597297 |
Target: 5'- cGCGGCGCGgcCGCGGgacccgAGcccGUGGCCGAg -3' miRNA: 3'- -CGCCGUGC--GCGCUa-----UCu--CAUCGGCUg -5' |
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5586 | 3' | -56.3 | NC_001806.1 | + | 25518 | 0.72 | 0.597297 |
Target: 5'- cGCGGgACGCGCcggGGAGggcuggGGCCGGg -3' miRNA: 3'- -CGCCgUGCGCGcuaUCUCa-----UCGGCUg -5' |
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5586 | 3' | -56.3 | NC_001806.1 | + | 147646 | 0.72 | 0.607464 |
Target: 5'- aCGGCGCGCGUccgcgGGgcGGGcGGCCGGCu -3' miRNA: 3'- cGCCGUGCGCG-----CUauCUCaUCGGCUG- -5' |
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5586 | 3' | -56.3 | NC_001806.1 | + | 115133 | 0.71 | 0.61765 |
Target: 5'- cGCGGCGCGCaGgGAUGGAccacGGCCagGACg -3' miRNA: 3'- -CGCCGUGCG-CgCUAUCUca--UCGG--CUG- -5' |
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5586 | 3' | -56.3 | NC_001806.1 | + | 1546 | 0.71 | 0.638046 |
Target: 5'- cGCGGCcCGCGCcaccGGGccgGGCCGGCg -3' miRNA: 3'- -CGCCGuGCGCGcuauCUCa--UCGGCUG- -5' |
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5586 | 3' | -56.3 | NC_001806.1 | + | 74649 | 0.71 | 0.648241 |
Target: 5'- uGCGGCAgGCGCGGgccaUGGAugccgccaAGCUGACg -3' miRNA: 3'- -CGCCGUgCGCGCU----AUCUca------UCGGCUG- -5' |
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5586 | 3' | -56.3 | NC_001806.1 | + | 30389 | 0.71 | 0.668585 |
Target: 5'- -gGGCGCGUGCGAcGGuGgcGCgCGGCu -3' miRNA: 3'- cgCCGUGCGCGCUaUCuCauCG-GCUG- -5' |
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5586 | 3' | -56.3 | NC_001806.1 | + | 15737 | 0.71 | 0.668585 |
Target: 5'- cCGGC-CGCGCGggAGcGGUAGCgCGAg -3' miRNA: 3'- cGCCGuGCGCGCuaUC-UCAUCG-GCUg -5' |
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5586 | 3' | -56.3 | NC_001806.1 | + | 69694 | 0.7 | 0.687804 |
Target: 5'- uGCGGCGgGCGCucguGggGGAGUuugagacGGCCGAg -3' miRNA: 3'- -CGCCGUgCGCG----CuaUCUCA-------UCGGCUg -5' |
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5586 | 3' | -56.3 | NC_001806.1 | + | 92248 | 0.7 | 0.692837 |
Target: 5'- uGCGGCgGCGCGUGAUGGAcauguuuaacaacggGUuucuGUCGGCc -3' miRNA: 3'- -CGCCG-UGCGCGCUAUCU---------------CAu---CGGCUG- -5' |
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5586 | 3' | -56.3 | NC_001806.1 | + | 1878 | 0.7 | 0.698859 |
Target: 5'- cGCGGCcuccacGCGCGCGA-AGAcccccgGGCCGAa -3' miRNA: 3'- -CGCCG------UGCGCGCUaUCUca----UCGGCUg -5' |
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5586 | 3' | -56.3 | NC_001806.1 | + | 76060 | 0.7 | 0.707855 |
Target: 5'- uGCGGCugGCGgGGgggcugcUGGAGcgGGCCcaGGCg -3' miRNA: 3'- -CGCCGugCGCgCU-------AUCUCa-UCGG--CUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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