miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5586 3' -56.3 NC_001806.1 + 73539 0.66 0.90932
Target:  5'- cUGGCcuccACGCGCcu--GAGccUGGCCGACg -3'
miRNA:   3'- cGCCG----UGCGCGcuauCUC--AUCGGCUG- -5'
5586 3' -56.3 NC_001806.1 + 1546 0.71 0.638046
Target:  5'- cGCGGCcCGCGCcaccGGGccgGGCCGGCg -3'
miRNA:   3'- -CGCCGuGCGCGcuauCUCa--UCGGCUG- -5'
5586 3' -56.3 NC_001806.1 + 74649 0.71 0.648241
Target:  5'- uGCGGCAgGCGCGGgccaUGGAugccgccaAGCUGACg -3'
miRNA:   3'- -CGCCGUgCGCGCU----AUCUca------UCGGCUG- -5'
5586 3' -56.3 NC_001806.1 + 30389 0.71 0.668585
Target:  5'- -gGGCGCGUGCGAcGGuGgcGCgCGGCu -3'
miRNA:   3'- cgCCGUGCGCGCUaUCuCauCG-GCUG- -5'
5586 3' -56.3 NC_001806.1 + 15737 0.71 0.668585
Target:  5'- cCGGC-CGCGCGggAGcGGUAGCgCGAg -3'
miRNA:   3'- cGCCGuGCGCGCuaUC-UCAUCG-GCUg -5'
5586 3' -56.3 NC_001806.1 + 69694 0.7 0.687804
Target:  5'- uGCGGCGgGCGCucguGggGGAGUuugagacGGCCGAg -3'
miRNA:   3'- -CGCCGUgCGCG----CuaUCUCA-------UCGGCUg -5'
5586 3' -56.3 NC_001806.1 + 92248 0.7 0.692837
Target:  5'- uGCGGCgGCGCGUGAUGGAcauguuuaacaacggGUuucuGUCGGCc -3'
miRNA:   3'- -CGCCG-UGCGCGCUAUCU---------------CAu---CGGCUG- -5'
5586 3' -56.3 NC_001806.1 + 1878 0.7 0.698859
Target:  5'- cGCGGCcuccacGCGCGCGA-AGAcccccgGGCCGAa -3'
miRNA:   3'- -CGCCG------UGCGCGCUaUCUca----UCGGCUg -5'
5586 3' -56.3 NC_001806.1 + 76060 0.7 0.707855
Target:  5'- uGCGGCugGCGgGGgggcugcUGGAGcgGGCCcaGGCg -3'
miRNA:   3'- -CGCCGugCGCgCU-------AUCUCa-UCGG--CUG- -5'
5586 3' -56.3 NC_001806.1 + 115133 0.71 0.61765
Target:  5'- cGCGGCGCGCaGgGAUGGAccacGGCCagGACg -3'
miRNA:   3'- -CGCCGUGCG-CgCUAUCUca--UCGG--CUG- -5'
5586 3' -56.3 NC_001806.1 + 147646 0.72 0.607464
Target:  5'- aCGGCGCGCGUccgcgGGgcGGGcGGCCGGCu -3'
miRNA:   3'- cGCCGUGCGCG-----CUauCUCaUCGGCUG- -5'
5586 3' -56.3 NC_001806.1 + 25518 0.72 0.597297
Target:  5'- cGCGGgACGCGCcggGGAGggcuggGGCCGGg -3'
miRNA:   3'- -CGCCgUGCGCGcuaUCUCa-----UCGGCUg -5'
5586 3' -56.3 NC_001806.1 + 139225 0.76 0.389948
Target:  5'- gGCGGCACGCGaCGGccaacGUGGCCGAg -3'
miRNA:   3'- -CGCCGUGCGC-GCUaucu-CAUCGGCUg -5'
5586 3' -56.3 NC_001806.1 + 37509 0.75 0.4069
Target:  5'- cCGGCAaaaGUGCGAUAGAGgcucgGGCCGuggGCg -3'
miRNA:   3'- cGCCGUg--CGCGCUAUCUCa----UCGGC---UG- -5'
5586 3' -56.3 NC_001806.1 + 95280 0.75 0.442149
Target:  5'- cGCGuGCugGCGCGcAUGGGGgcggggGGCgCGGCg -3'
miRNA:   3'- -CGC-CGugCGCGC-UAUCUCa-----UCG-GCUG- -5'
5586 3' -56.3 NC_001806.1 + 98237 0.74 0.488525
Target:  5'- uGCGGCugACGCGCGAUGcGAucgAGCCGuGCa -3'
miRNA:   3'- -CGCCG--UGCGCGCUAU-CUca-UCGGC-UG- -5'
5586 3' -56.3 NC_001806.1 + 25924 0.73 0.537059
Target:  5'- gGCGuGCGCGCGCGcggcgggcGUGGGGgcggGGCCG-Cg -3'
miRNA:   3'- -CGC-CGUGCGCGC--------UAUCUCa---UCGGCuG- -5'
5586 3' -56.3 NC_001806.1 + 21918 0.73 0.556949
Target:  5'- -gGGCcCGCGCGGc--GGUGGCCGGCc -3'
miRNA:   3'- cgCCGuGCGCGCUaucUCAUCGGCUG- -5'
5586 3' -56.3 NC_001806.1 + 142151 0.72 0.587155
Target:  5'- gGCGGCGucccguCGCGgGGUGGGGU--CCGACg -3'
miRNA:   3'- -CGCCGU------GCGCgCUAUCUCAucGGCUG- -5'
5586 3' -56.3 NC_001806.1 + 70855 0.72 0.597297
Target:  5'- cGCGGCGCGgcCGCGGgacccgAGcccGUGGCCGAg -3'
miRNA:   3'- -CGCCGUGC--GCGCUa-----UCu--CAUCGGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.