miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5586 3' -56.3 NC_001806.1 + 45283 0.66 0.875554
Target:  5'- aGCGGCGggagacgcgggccCGCGCGG-GGAGccGcCCGGCg -3'
miRNA:   3'- -CGCCGU-------------GCGCGCUaUCUCauC-GGCUG- -5'
5586 3' -56.3 NC_001806.1 + 122247 0.66 0.896784
Target:  5'- uGCGG-AUGUGCGcc-GuGUAGCCGAUc -3'
miRNA:   3'- -CGCCgUGCGCGCuauCuCAUCGGCUG- -5'
5586 3' -56.3 NC_001806.1 + 73539 0.66 0.90932
Target:  5'- cUGGCcuccACGCGCcu--GAGccUGGCCGACg -3'
miRNA:   3'- cGCCG----UGCGCGcuauCUC--AUCGGCUG- -5'
5586 3' -56.3 NC_001806.1 + 56622 0.66 0.883332
Target:  5'- -gGGC-CGCGCGAcccUGGccGGUgcgaccucaucGGCCGGCg -3'
miRNA:   3'- cgCCGuGCGCGCU---AUC--UCA-----------UCGGCUG- -5'
5586 3' -56.3 NC_001806.1 + 76252 0.66 0.896133
Target:  5'- cGCGGCGCGCgaucggaagcgugGCGcUGGAccUGGCCGcCg -3'
miRNA:   3'- -CGCCGUGCG-------------CGCuAUCUc-AUCGGCuG- -5'
5586 3' -56.3 NC_001806.1 + 133679 0.67 0.835375
Target:  5'- gGCGGCGCGuCGUgcgugucugucccgGAggcggGGAGUcGGUCGGCg -3'
miRNA:   3'- -CGCCGUGC-GCG--------------CUa----UCUCA-UCGGCUG- -5'
5586 3' -56.3 NC_001806.1 + 367 0.67 0.837837
Target:  5'- uGCGcGCGCGCGCGcccgcgGGGGgcccgGGCUGcCa -3'
miRNA:   3'- -CGC-CGUGCGCGCua----UCUCa----UCGGCuG- -5'
5586 3' -56.3 NC_001806.1 + 66420 0.67 0.837837
Target:  5'- -aGGUGCGUGCGGUGGGGcgcccccgcaGGuCCGGCu -3'
miRNA:   3'- cgCCGUGCGCGCUAUCUCa---------UC-GGCUG- -5'
5586 3' -56.3 NC_001806.1 + 34317 0.67 0.837837
Target:  5'- gGCGGCGCGC-CGGacGGGgcGCUGGa -3'
miRNA:   3'- -CGCCGUGCGcGCUauCUCauCGGCUg -5'
5586 3' -56.3 NC_001806.1 + 151179 0.67 0.837837
Target:  5'- cGCGGUgACGCGCaGGcGGAGggcgaGGCgCGGCg -3'
miRNA:   3'- -CGCCG-UGCGCG-CUaUCUCa----UCG-GCUG- -5'
5586 3' -56.3 NC_001806.1 + 93446 0.67 0.868996
Target:  5'- cGCGGCaACG-GCGA----GUGGUCGACg -3'
miRNA:   3'- -CGCCG-UGCgCGCUaucuCAUCGGCUG- -5'
5586 3' -56.3 NC_001806.1 + 132148 0.67 0.845923
Target:  5'- gGCGGCGCGCGUugccGAGcaucCCGACg -3'
miRNA:   3'- -CGCCGUGCGCGcuauCUCauc-GGCUG- -5'
5586 3' -56.3 NC_001806.1 + 54294 0.67 0.853815
Target:  5'- aGCGGUggGCGgGAUAGAGgggGGaCCa-- -3'
miRNA:   3'- -CGCCGugCGCgCUAUCUCa--UC-GGcug -5'
5586 3' -56.3 NC_001806.1 + 78642 0.67 0.853815
Target:  5'- cGCGGCGCGCGUuacggccAUGGAccugGU-GCUGGCg -3'
miRNA:   3'- -CGCCGUGCGCGc------UAUCU----CAuCGGCUG- -5'
5586 3' -56.3 NC_001806.1 + 78349 0.67 0.868996
Target:  5'- cGCGGCGC-CGCGcUGGGaaAGCUGAg -3'
miRNA:   3'- -CGCCGUGcGCGCuAUCUcaUCGGCUg -5'
5586 3' -56.3 NC_001806.1 + 50018 0.67 0.868257
Target:  5'- -aGGCGCGCGggucugaccuggaCGAcAGGGcGGCCGAg -3'
miRNA:   3'- cgCCGUGCGC-------------GCUaUCUCaUCGGCUg -5'
5586 3' -56.3 NC_001806.1 + 151264 0.67 0.868996
Target:  5'- -gGGCccACGCcggGCGGUGGGGgccggGGCCGGg -3'
miRNA:   3'- cgCCG--UGCG---CGCUAUCUCa----UCGGCUg -5'
5586 3' -56.3 NC_001806.1 + 3131 0.67 0.868996
Target:  5'- cGCGGCA-GCGCGGggcccAGGGcc-CCGGCg -3'
miRNA:   3'- -CGCCGUgCGCGCUa----UCUCaucGGCUG- -5'
5586 3' -56.3 NC_001806.1 + 5589 0.67 0.868996
Target:  5'- cCGGCACGC-CGggGGcccGUGGCCG-Cg -3'
miRNA:   3'- cGCCGUGCGcGCuaUCu--CAUCGGCuG- -5'
5586 3' -56.3 NC_001806.1 + 57011 0.67 0.868996
Target:  5'- gGCGGCGCccaGUGCcaggcacuGGGUGGCCGGg -3'
miRNA:   3'- -CGCCGUG---CGCGcuau----CUCAUCGGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.