miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5586 3' -56.3 NC_001806.1 + 152077 0.66 0.896784
Target:  5'- uGCGcGCGCGCGCGcccgcGGGgGGCCcgGGCu -3'
miRNA:   3'- -CGC-CGUGCGCGCuau--CUCaUCGG--CUG- -5'
5586 3' -56.3 NC_001806.1 + 151562 0.66 0.89017
Target:  5'- gGCGGCGgGggcCGCGAUGGcGgcGgCGGCg -3'
miRNA:   3'- -CGCCGUgC---GCGCUAUCuCauCgGCUG- -5'
5586 3' -56.3 NC_001806.1 + 151264 0.67 0.868996
Target:  5'- -gGGCccACGCcggGCGGUGGGGgccggGGCCGGg -3'
miRNA:   3'- cgCCG--UGCG---CGCUAUCUCa----UCGGCUg -5'
5586 3' -56.3 NC_001806.1 + 151179 0.67 0.837837
Target:  5'- cGCGGUgACGCGCaGGcGGAGggcgaGGCgCGGCg -3'
miRNA:   3'- -CGCCG-UGCGCG-CUaUCUCa----UCG-GCUG- -5'
5586 3' -56.3 NC_001806.1 + 150995 0.66 0.883332
Target:  5'- cGCGGCGCGC-CaGgcGGGcGGCCGAg -3'
miRNA:   3'- -CGCCGUGCGcGcUauCUCaUCGGCUg -5'
5586 3' -56.3 NC_001806.1 + 147646 0.72 0.607464
Target:  5'- aCGGCGCGCGUccgcgGGgcGGGcGGCCGGCu -3'
miRNA:   3'- cGCCGUGCGCG-----CUauCUCaUCGGCUG- -5'
5586 3' -56.3 NC_001806.1 + 142151 0.72 0.587155
Target:  5'- gGCGGCGucccguCGCGgGGUGGGGU--CCGACg -3'
miRNA:   3'- -CGCCGU------GCGCgCUAUCUCAucGGCUG- -5'
5586 3' -56.3 NC_001806.1 + 140027 0.69 0.776475
Target:  5'- cGCGGCGaaaGCGCcc-GGAGcgccacGGCCGGCa -3'
miRNA:   3'- -CGCCGUg--CGCGcuaUCUCa-----UCGGCUG- -5'
5586 3' -56.3 NC_001806.1 + 139803 0.66 0.876272
Target:  5'- aCGGCAccCGCGCGAUcauGGUacggGGCCGGg -3'
miRNA:   3'- cGCCGU--GCGCGCUAuc-UCA----UCGGCUg -5'
5586 3' -56.3 NC_001806.1 + 139225 0.76 0.389948
Target:  5'- gGCGGCACGCGaCGGccaacGUGGCCGAg -3'
miRNA:   3'- -CGCCGUGCGC-GCUaucu-CAUCGGCUg -5'
5586 3' -56.3 NC_001806.1 + 136309 0.7 0.708851
Target:  5'- cGCGGUcguaguccgccACGCGCG-UGGAGUcgaaGGCCaGCg -3'
miRNA:   3'- -CGCCG-----------UGCGCGCuAUCUCA----UCGGcUG- -5'
5586 3' -56.3 NC_001806.1 + 133679 0.67 0.835375
Target:  5'- gGCGGCGCGuCGUgcgugucugucccgGAggcggGGAGUcGGUCGGCg -3'
miRNA:   3'- -CGCCGUGC-GCG--------------CUa----UCUCA-UCGGCUG- -5'
5586 3' -56.3 NC_001806.1 + 132148 0.67 0.845923
Target:  5'- gGCGGCGCGCGUugccGAGcaucCCGACg -3'
miRNA:   3'- -CGCCGUGCGCGcuauCUCauc-GGCUG- -5'
5586 3' -56.3 NC_001806.1 + 122359 0.66 0.883332
Target:  5'- gGUGGCGCGCugGCGGaAGuGgcGCaCGGCc -3'
miRNA:   3'- -CGCCGUGCG--CGCUaUCuCauCG-GCUG- -5'
5586 3' -56.3 NC_001806.1 + 122247 0.66 0.896784
Target:  5'- uGCGG-AUGUGCGcc-GuGUAGCCGAUc -3'
miRNA:   3'- -CGCCgUGCGCGCuauCuCAUCGGCUG- -5'
5586 3' -56.3 NC_001806.1 + 120930 0.91 0.044512
Target:  5'- cGCGGCACGCGCGAUAGAGUcGaCGACc -3'
miRNA:   3'- -CGCCGUGCGCGCUAUCUCAuCgGCUG- -5'
5586 3' -56.3 NC_001806.1 + 119552 0.66 0.896784
Target:  5'- aGCGGgG-GCGCcAUGGGGgcGGCUGACg -3'
miRNA:   3'- -CGCCgUgCGCGcUAUCUCa-UCGGCUG- -5'
5586 3' -56.3 NC_001806.1 + 117746 0.67 0.861509
Target:  5'- uGUGuGCACGUGCG-UGGcGUGG-CGACg -3'
miRNA:   3'- -CGC-CGUGCGCGCuAUCuCAUCgGCUG- -5'
5586 3' -56.3 NC_001806.1 + 115133 0.71 0.61765
Target:  5'- cGCGGCGCGCaGgGAUGGAccacGGCCagGACg -3'
miRNA:   3'- -CGCCGUGCG-CgCUAUCUca--UCGG--CUG- -5'
5586 3' -56.3 NC_001806.1 + 113245 0.68 0.818549
Target:  5'- aGCuGCACccCGCGuucgacuucuuugugGGGGUGGCCGACg -3'
miRNA:   3'- -CGcCGUGc-GCGCua-------------UCUCAUCGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.