miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5587 5' -58 NC_001806.1 + 126473 0.66 0.833882
Target:  5'- ---aGCGuGCGAUACUUcgcGCCCGGGc- -3'
miRNA:   3'- cagaCGCuCGUUAUGGA---CGGGCCCcu -5'
5587 5' -58 NC_001806.1 + 144777 0.66 0.833882
Target:  5'- cGUCUGUccccucacgGGGCGAagGCCgcguacgGCCCGGGa- -3'
miRNA:   3'- -CAGACG---------CUCGUUa-UGGa------CGGGCCCcu -5'
5587 5' -58 NC_001806.1 + 38557 0.66 0.825542
Target:  5'- ---aGCGAGCG--ACCggGCCCgaaucGGGGAg -3'
miRNA:   3'- cagaCGCUCGUuaUGGa-CGGG-----CCCCU- -5'
5587 5' -58 NC_001806.1 + 74880 0.66 0.825542
Target:  5'- -cCUGCGGGCcuc-CCUGCCgGcGGGc -3'
miRNA:   3'- caGACGCUCGuuauGGACGGgC-CCCu -5'
5587 5' -58 NC_001806.1 + 65448 0.66 0.817028
Target:  5'- ---aGCGGGgGAUGCCgcgGCCCccggguccuGGGGGc -3'
miRNA:   3'- cagaCGCUCgUUAUGGa--CGGG---------CCCCU- -5'
5587 5' -58 NC_001806.1 + 9166 0.66 0.817028
Target:  5'- aUCgGgGAGaCAAcgGCCguguaGCCCGGGGGu -3'
miRNA:   3'- cAGaCgCUC-GUUa-UGGa----CGGGCCCCU- -5'
5587 5' -58 NC_001806.1 + 66809 0.66 0.790522
Target:  5'- aUCacgGcCGAGCGggGCCgGCCCGGGuGGc -3'
miRNA:   3'- cAGa--C-GCUCGUuaUGGaCGGGCCC-CU- -5'
5587 5' -58 NC_001806.1 + 54943 0.67 0.781393
Target:  5'- cGUCUGCGuGUcg-AUCUgGCCCGGGu- -3'
miRNA:   3'- -CAGACGCuCGuuaUGGA-CGGGCCCcu -5'
5587 5' -58 NC_001806.1 + 121415 0.67 0.781393
Target:  5'- ---cGCGuGCugcGCCUuggGCCCGGGGGc -3'
miRNA:   3'- cagaCGCuCGuuaUGGA---CGGGCCCCU- -5'
5587 5' -58 NC_001806.1 + 41525 0.67 0.753247
Target:  5'- ---aGCGcGGCaAAUGCCUGuCCCGuGGGGa -3'
miRNA:   3'- cagaCGC-UCG-UUAUGGAC-GGGC-CCCU- -5'
5587 5' -58 NC_001806.1 + 55503 0.68 0.724152
Target:  5'- gGUC-GCG-GCGGUcgcACCacacggGCCCGGGGGg -3'
miRNA:   3'- -CAGaCGCuCGUUA---UGGa-----CGGGCCCCU- -5'
5587 5' -58 NC_001806.1 + 31864 0.68 0.714285
Target:  5'- uUCcGCGAGC---GCCUGCCCGcccGGAc -3'
miRNA:   3'- cAGaCGCUCGuuaUGGACGGGCc--CCU- -5'
5587 5' -58 NC_001806.1 + 2769 0.68 0.694351
Target:  5'- ---cGCGGGCGGgccugcGCCgcggcgGCCCGGGGc -3'
miRNA:   3'- cagaCGCUCGUUa-----UGGa-----CGGGCCCCu -5'
5587 5' -58 NC_001806.1 + 24778 0.69 0.664088
Target:  5'- -gCUGCGcGGCGAcgACgacgGCCCGGGGGc -3'
miRNA:   3'- caGACGC-UCGUUa-UGga--CGGGCCCCU- -5'
5587 5' -58 NC_001806.1 + 29501 0.69 0.664088
Target:  5'- aUCaGCGGuucgccccGCGGUACCUGaCCCuGGGGGg -3'
miRNA:   3'- cAGaCGCU--------CGUUAUGGAC-GGG-CCCCU- -5'
5587 5' -58 NC_001806.1 + 23918 0.69 0.663074
Target:  5'- -gCUGcCGGGCGAggACCUggccggcggcgggGCCUGGGGGg -3'
miRNA:   3'- caGAC-GCUCGUUa-UGGA-------------CGGGCCCCU- -5'
5587 5' -58 NC_001806.1 + 72495 0.69 0.633593
Target:  5'- -cCUGCGGgGCGAgAUCgcggGCCUGGGGGa -3'
miRNA:   3'- caGACGCU-CGUUaUGGa---CGGGCCCCU- -5'
5587 5' -58 NC_001806.1 + 129578 0.7 0.613244
Target:  5'- gGUCgGCGAGUAc-GCCaUGCCCGGGu- -3'
miRNA:   3'- -CAGaCGCUCGUuaUGG-ACGGGCCCcu -5'
5587 5' -58 NC_001806.1 + 5085 0.7 0.603087
Target:  5'- cUCgggGUGGGCGGcgGCCcgucggugggGCCCGGGGAg -3'
miRNA:   3'- cAGa--CGCUCGUUa-UGGa---------CGGGCCCCU- -5'
5587 5' -58 NC_001806.1 + 77518 0.7 0.592951
Target:  5'- -cCUGCGAGUGAgcggagGCCCGGGGc -3'
miRNA:   3'- caGACGCUCGUUaugga-CGGGCCCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.