miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5589 3' -57.8 NC_001806.1 + 63457 0.66 0.859463
Target:  5'- aGGGGcUCCCggUCgUGGCCGCaCUGcgcacaAUGCc -3'
miRNA:   3'- -CCCUuAGGG--AG-ACCGGCGgGAC------UACG- -5'
5589 3' -57.8 NC_001806.1 + 116835 0.66 0.856423
Target:  5'- cGGGAGgccgCCCagCUcauucaccccgaaGCCccgGCCCUGAUGCa -3'
miRNA:   3'- -CCCUUa---GGGa-GAc------------CGG---CGGGACUACG- -5'
5589 3' -57.8 NC_001806.1 + 77530 0.66 0.851804
Target:  5'- cGGAggCCCg--GGgC-CCCUGGUGCu -3'
miRNA:   3'- cCCUuaGGGagaCCgGcGGGACUACG- -5'
5589 3' -57.8 NC_001806.1 + 31249 0.66 0.843951
Target:  5'- aGGGca-CCCUagUGGgCGCCCUGGacuuccgcagccUGCg -3'
miRNA:   3'- -CCCuuaGGGAg-ACCgGCGGGACU------------ACG- -5'
5589 3' -57.8 NC_001806.1 + 125738 0.66 0.835911
Target:  5'- cGGuc-CCCUCUGGcCCGCCUgGAUu- -3'
miRNA:   3'- cCCuuaGGGAGACC-GGCGGGaCUAcg -5'
5589 3' -57.8 NC_001806.1 + 2386 0.66 0.819299
Target:  5'- cGGGGAUCUggCgcauccaGGCCGCCaUGcgGCg -3'
miRNA:   3'- -CCCUUAGGgaGa------CCGGCGGgACuaCG- -5'
5589 3' -57.8 NC_001806.1 + 59000 0.67 0.810741
Target:  5'- aGGGcgccCCCUCcuccGGCUGCCCgaggGAcGCg -3'
miRNA:   3'- -CCCuua-GGGAGa---CCGGCGGGa---CUaCG- -5'
5589 3' -57.8 NC_001806.1 + 23804 0.67 0.810741
Target:  5'- cGGGGGccgCCuCUUUGGCC-CCCUGc-GCg -3'
miRNA:   3'- -CCCUUa--GG-GAGACCGGcGGGACuaCG- -5'
5589 3' -57.8 NC_001806.1 + 73529 0.67 0.802026
Target:  5'- gGGGGA-CUUUCUGGCCuccacGCgCCUGA-GCc -3'
miRNA:   3'- -CCCUUaGGGAGACCGG-----CG-GGACUaCG- -5'
5589 3' -57.8 NC_001806.1 + 5894 0.67 0.793162
Target:  5'- cGGGcggCCCaagGGCCGCCCgccuUGCc -3'
miRNA:   3'- -CCCuuaGGGagaCCGGCGGGacu-ACG- -5'
5589 3' -57.8 NC_001806.1 + 67498 0.67 0.793162
Target:  5'- cGGggUCCCgaccccCUGGggaGCCCUGG-GCc -3'
miRNA:   3'- cCCuuAGGGa-----GACCgg-CGGGACUaCG- -5'
5589 3' -57.8 NC_001806.1 + 131366 0.67 0.793162
Target:  5'- cGGAGcUCCCcaccgaGGCCugGCCCaUGAUGCa -3'
miRNA:   3'- cCCUU-AGGGaga---CCGG--CGGG-ACUACG- -5'
5589 3' -57.8 NC_001806.1 + 56702 0.67 0.784157
Target:  5'- cGGGAAcCCCg--GGUCGCUCUGGg-- -3'
miRNA:   3'- -CCCUUaGGGagaCCGGCGGGACUacg -5'
5589 3' -57.8 NC_001806.1 + 127680 0.67 0.782339
Target:  5'- cGGAAUCuCCguaccggucgagCUGGCCGCCguaUGAgaucGCg -3'
miRNA:   3'- cCCUUAG-GGa-----------GACCGGCGGg--ACUa---CG- -5'
5589 3' -57.8 NC_001806.1 + 132564 0.67 0.775019
Target:  5'- gGGGAcccGUCCCguaCUuuGCCGUCCUGggGUu -3'
miRNA:   3'- -CCCU---UAGGGa--GAc-CGGCGGGACuaCG- -5'
5589 3' -57.8 NC_001806.1 + 20351 0.67 0.775019
Target:  5'- cGGGcggCCCUUgGGCCGCCCg----- -3'
miRNA:   3'- -CCCuuaGGGAGaCCGGCGGGacuacg -5'
5589 3' -57.8 NC_001806.1 + 27837 0.68 0.756379
Target:  5'- cGGGuuGGUCCC-CggggacggGGCCGCCCcGcgGUg -3'
miRNA:   3'- -CCC--UUAGGGaGa-------CCGGCGGGaCuaCG- -5'
5589 3' -57.8 NC_001806.1 + 54496 0.68 0.746895
Target:  5'- uGGggUCCCUgggugggggCUGGUgacUGCCgUGGUGUu -3'
miRNA:   3'- cCCuuAGGGA---------GACCG---GCGGgACUACG- -5'
5589 3' -57.8 NC_001806.1 + 96112 0.68 0.727643
Target:  5'- cGGGGAgCUCgagUUGcGCCGCCCgGAcUGCa -3'
miRNA:   3'- -CCCUUaGGGa--GAC-CGGCGGGaCU-ACG- -5'
5589 3' -57.8 NC_001806.1 + 23299 0.68 0.727643
Target:  5'- -aGAGUCCCggcccggCccGGCCGCCCggagGcgGCg -3'
miRNA:   3'- ccCUUAGGGa------Ga-CCGGCGGGa---CuaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.