miRNA display CGI


Results 21 - 40 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5590 3' -53.5 NC_001806.1 + 26412 0.66 0.976446
Target:  5'- gCCCCCGGccGCCcgGGcccACGgGCGCc--- -3'
miRNA:   3'- -GGGGGCU--UGGuaCU---UGCgCGUGaacc -5'
5590 3' -53.5 NC_001806.1 + 132944 0.66 0.976446
Target:  5'- aCCCCCacggccggacGGGCCuagcaagacUGGACGCGCuggUGGu -3'
miRNA:   3'- -GGGGG----------CUUGGu--------ACUUGCGCGugaACC- -5'
5590 3' -53.5 NC_001806.1 + 65647 0.66 0.971143
Target:  5'- gCCCCGGcgGCCucccccugGGugGCuGCGCUgGGg -3'
miRNA:   3'- gGGGGCU--UGGua------CUugCG-CGUGAaCC- -5'
5590 3' -53.5 NC_001806.1 + 75468 0.66 0.976446
Target:  5'- cUCCCUGAuCCAggccgcGACGCGCGCg--- -3'
miRNA:   3'- -GGGGGCUuGGUac----UUGCGCGUGaacc -5'
5590 3' -53.5 NC_001806.1 + 30221 0.66 0.976446
Target:  5'- gCCCCCGcgcGGCCGUGGccccguGCGUGCGa---- -3'
miRNA:   3'- -GGGGGC---UUGGUACU------UGCGCGUgaacc -5'
5590 3' -53.5 NC_001806.1 + 141946 0.66 0.971143
Target:  5'- cCCCCCGuuuguuaaauCCAUGGgagggucgggggGCGCGgACgaGGa -3'
miRNA:   3'- -GGGGGCuu--------GGUACU------------UGCGCgUGaaCC- -5'
5590 3' -53.5 NC_001806.1 + 76650 0.66 0.974936
Target:  5'- gUCCCGGcgACCGUGGccaagacgcuggaccAgGCGCGCUcGGc -3'
miRNA:   3'- gGGGGCU--UGGUACU---------------UgCGCGUGAaCC- -5'
5590 3' -53.5 NC_001806.1 + 2830 0.66 0.971143
Target:  5'- gCCCCgGGGgCGUGGaggggggcGCGgGCGCggGGa -3'
miRNA:   3'- -GGGGgCUUgGUACU--------UGCgCGUGaaCC- -5'
5590 3' -53.5 NC_001806.1 + 50642 0.66 0.976446
Target:  5'- aCgCCCGGGCgugcggGGACGCGCACc-GGc -3'
miRNA:   3'- -GgGGGCUUGgua---CUUGCGCGUGaaCC- -5'
5590 3' -53.5 NC_001806.1 + 53833 0.66 0.978583
Target:  5'- -gCCCGAggaucuuGCCGacUGGACGCGUGCgacGGc -3'
miRNA:   3'- ggGGGCU-------UGGU--ACUUGCGCGUGaa-CC- -5'
5590 3' -53.5 NC_001806.1 + 50741 0.66 0.976446
Target:  5'- uUgCCGAcACCGUGGugGCGUGCgUGa -3'
miRNA:   3'- gGgGGCU-UGGUACUugCGCGUGaACc -5'
5590 3' -53.5 NC_001806.1 + 22536 0.66 0.978811
Target:  5'- gCCCCUGuuggcGCgCGaGAACGCgGCGCUgacgGGg -3'
miRNA:   3'- -GGGGGCu----UG-GUaCUUGCG-CGUGAa---CC- -5'
5590 3' -53.5 NC_001806.1 + 151258 0.67 0.965033
Target:  5'- cCCCCCGGGCCc---ACGcCGgGCggUGGg -3'
miRNA:   3'- -GGGGGCUUGGuacuUGC-GCgUGa-ACC- -5'
5590 3' -53.5 NC_001806.1 + 65464 0.67 0.950208
Target:  5'- gCCCCCGggUCcUGGGggcgccCGCGCACc--- -3'
miRNA:   3'- -GGGGGCuuGGuACUU------GCGCGUGaacc -5'
5590 3' -53.5 NC_001806.1 + 22180 0.67 0.950208
Target:  5'- gCCCCGGcgGCCGUGuGgGCGCcCgagcUGGg -3'
miRNA:   3'- gGGGGCU--UGGUACuUgCGCGuGa---ACC- -5'
5590 3' -53.5 NC_001806.1 + 52565 0.67 0.964044
Target:  5'- uCCCCCGGACgaCAUGGccaGCGgcccgggggggcauCGCGCggGGg -3'
miRNA:   3'- -GGGGGCUUG--GUACU---UGC--------------GCGUGaaCC- -5'
5590 3' -53.5 NC_001806.1 + 120109 0.67 0.965033
Target:  5'- gCCCUGGGCCAggccauccGGGC-CGCGCUUcaGGg -3'
miRNA:   3'- gGGGGCUUGGUa-------CUUGcGCGUGAA--CC- -5'
5590 3' -53.5 NC_001806.1 + 113689 0.67 0.965033
Target:  5'- -aCCgGGACC-UGGugGCGCACg--- -3'
miRNA:   3'- ggGGgCUUGGuACUugCGCGUGaacc -5'
5590 3' -53.5 NC_001806.1 + 118785 0.67 0.965033
Target:  5'- gCCCCGGACUcgGGACGgcCGCaaACUUccaGGu -3'
miRNA:   3'- gGGGGCUUGGuaCUUGC--GCG--UGAA---CC- -5'
5590 3' -53.5 NC_001806.1 + 102562 0.67 0.965033
Target:  5'- aUCCCCGAACgugaCcgGAGCGCGguCg--- -3'
miRNA:   3'- -GGGGGCUUG----GuaCUUGCGCguGaacc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.