Results 1 - 20 of 107 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5590 | 3' | -53.5 | NC_001806.1 | + | 141946 | 0.66 | 0.971143 |
Target: 5'- cCCCCCGuuuguuaaauCCAUGGgagggucgggggGCGCGgACgaGGa -3' miRNA: 3'- -GGGGGCuu--------GGUACU------------UGCGCgUGaaCC- -5' |
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5590 | 3' | -53.5 | NC_001806.1 | + | 30221 | 0.66 | 0.976446 |
Target: 5'- gCCCCCGcgcGGCCGUGGccccguGCGUGCGa---- -3' miRNA: 3'- -GGGGGC---UUGGUACU------UGCGCGUgaacc -5' |
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5590 | 3' | -53.5 | NC_001806.1 | + | 103688 | 0.66 | 0.973892 |
Target: 5'- cCCCCCGcccuCCGUGGAgGUGgGggUUUGGu -3' miRNA: 3'- -GGGGGCuu--GGUACUUgCGCgU--GAACC- -5' |
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5590 | 3' | -53.5 | NC_001806.1 | + | 10683 | 0.66 | 0.971143 |
Target: 5'- aCCCCCGGucgcagaugggGCCggGGGgGCGUACg--- -3' miRNA: 3'- -GGGGGCU-----------UGGuaCUUgCGCGUGaacc -5' |
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5590 | 3' | -53.5 | NC_001806.1 | + | 140465 | 0.66 | 0.976199 |
Target: 5'- gCCCCCGAgGCCAgcauGACGUuaucucgguggagGCGCaUUGGc -3' miRNA: 3'- -GGGGGCU-UGGUac--UUGCG-------------CGUG-AACC- -5' |
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5590 | 3' | -53.5 | NC_001806.1 | + | 50642 | 0.66 | 0.976446 |
Target: 5'- aCgCCCGGGCgugcggGGACGCGCACc-GGc -3' miRNA: 3'- -GgGGGCUUGgua---CUUGCGCGUGaaCC- -5' |
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5590 | 3' | -53.5 | NC_001806.1 | + | 65647 | 0.66 | 0.971143 |
Target: 5'- gCCCCGGcgGCCucccccugGGugGCuGCGCUgGGg -3' miRNA: 3'- gGGGGCU--UGGua------CUugCG-CGUGAaCC- -5' |
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5590 | 3' | -53.5 | NC_001806.1 | + | 76650 | 0.66 | 0.974936 |
Target: 5'- gUCCCGGcgACCGUGGccaagacgcuggaccAgGCGCGCUcGGc -3' miRNA: 3'- gGGGGCU--UGGUACU---------------UgCGCGUGAaCC- -5' |
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5590 | 3' | -53.5 | NC_001806.1 | + | 26412 | 0.66 | 0.976446 |
Target: 5'- gCCCCCGGccGCCcgGGcccACGgGCGCc--- -3' miRNA: 3'- -GGGGGCU--UGGuaCU---UGCgCGUGaacc -5' |
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5590 | 3' | -53.5 | NC_001806.1 | + | 75349 | 0.66 | 0.968192 |
Target: 5'- -aCUCGGuugGCCcUGGACGCGCGggUGGc -3' miRNA: 3'- ggGGGCU---UGGuACUUGCGCGUgaACC- -5' |
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5590 | 3' | -53.5 | NC_001806.1 | + | 50741 | 0.66 | 0.976446 |
Target: 5'- uUgCCGAcACCGUGGugGCGUGCgUGa -3' miRNA: 3'- gGgGGCU-UGGUACUugCGCGUGaACc -5' |
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5590 | 3' | -53.5 | NC_001806.1 | + | 132944 | 0.66 | 0.976446 |
Target: 5'- aCCCCCacggccggacGGGCCuagcaagacUGGACGCGCuggUGGu -3' miRNA: 3'- -GGGGG----------CUUGGu--------ACUUGCGCGugaACC- -5' |
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5590 | 3' | -53.5 | NC_001806.1 | + | 42593 | 0.66 | 0.973892 |
Target: 5'- gCCCCaCGAGCgAgcguagGGACGCGCcCUg-- -3' miRNA: 3'- -GGGG-GCUUGgUa-----CUUGCGCGuGAacc -5' |
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5590 | 3' | -53.5 | NC_001806.1 | + | 75468 | 0.66 | 0.976446 |
Target: 5'- cUCCCUGAuCCAggccgcGACGCGCGCg--- -3' miRNA: 3'- -GGGGGCUuGGUac----UUGCGCGUGaacc -5' |
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5590 | 3' | -53.5 | NC_001806.1 | + | 65697 | 0.66 | 0.976446 |
Target: 5'- uCCCCC-AACCG-GGGCcCGCGCUUcgacGGg -3' miRNA: 3'- -GGGGGcUUGGUaCUUGcGCGUGAA----CC- -5' |
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5590 | 3' | -53.5 | NC_001806.1 | + | 95040 | 0.66 | 0.976446 |
Target: 5'- aCCgCCGcgguGGCCGUGGAacugGCGCugUUcGGg -3' miRNA: 3'- -GGgGGC----UUGGUACUUg---CGCGugAA-CC- -5' |
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5590 | 3' | -53.5 | NC_001806.1 | + | 65223 | 0.66 | 0.971143 |
Target: 5'- cCCCCCGAauACCGcaGAGCG-GCGCcgUGu -3' miRNA: 3'- -GGGGGCU--UGGUa-CUUGCgCGUGa-ACc -5' |
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5590 | 3' | -53.5 | NC_001806.1 | + | 98029 | 0.66 | 0.973892 |
Target: 5'- aCCgUGGGCCggcggGUGAGCGCGCGgaUGc -3' miRNA: 3'- gGGgGCUUGG-----UACUUGCGCGUgaACc -5' |
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5590 | 3' | -53.5 | NC_001806.1 | + | 101330 | 0.66 | 0.968192 |
Target: 5'- uCUCCCGGggcaucggcuGCCAU--GCGCGCACccacagagacuUUGGu -3' miRNA: 3'- -GGGGGCU----------UGGUAcuUGCGCGUG-----------AACC- -5' |
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5590 | 3' | -53.5 | NC_001806.1 | + | 25916 | 0.66 | 0.978811 |
Target: 5'- -gUCCGGGCggCGUGcGCGCGCGCggcgggcgUGGg -3' miRNA: 3'- ggGGGCUUG--GUACuUGCGCGUGa-------ACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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