miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5590 3' -53.5 NC_001806.1 + 25916 0.66 0.978811
Target:  5'- -gUCCGGGCggCGUGcGCGCGCGCggcgggcgUGGg -3'
miRNA:   3'- ggGGGCUUG--GUACuUGCGCGUGa-------ACC- -5'
5590 3' -53.5 NC_001806.1 + 44283 0.72 0.775862
Target:  5'- gCCCCCGcAACCAgGAGCuGgGCGacCUUGGc -3'
miRNA:   3'- -GGGGGC-UUGGUaCUUG-CgCGU--GAACC- -5'
5590 3' -53.5 NC_001806.1 + 92954 0.72 0.775862
Target:  5'- gCgCUGAuggacGCCGUGGACGCGCAUccGGg -3'
miRNA:   3'- gGgGGCU-----UGGUACUUGCGCGUGaaCC- -5'
5590 3' -53.5 NC_001806.1 + 60650 0.71 0.803243
Target:  5'- cCCgCCCGAGCuCGUccaggucccGAACGCGCAgCUgcUGGa -3'
miRNA:   3'- -GG-GGGCUUG-GUA---------CUUGCGCGU-GA--ACC- -5'
5590 3' -53.5 NC_001806.1 + 58475 0.71 0.820736
Target:  5'- aCCCCGAGCUcgaacgugGUGGGCGUgGCACUa-- -3'
miRNA:   3'- gGGGGCUUGG--------UACUUGCG-CGUGAacc -5'
5590 3' -53.5 NC_001806.1 + 120831 0.71 0.845668
Target:  5'- cCCCCCGccCCcgGcAugGCGCAgcUGGg -3'
miRNA:   3'- -GGGGGCuuGGuaC-UugCGCGUgaACC- -5'
5590 3' -53.5 NC_001806.1 + 50187 0.7 0.852816
Target:  5'- gUCCCUGcuguacuGGCCcgGGguGCGCGCGCUgcUGGa -3'
miRNA:   3'- -GGGGGC-------UUGGuaCU--UGCGCGUGA--ACC- -5'
5590 3' -53.5 NC_001806.1 + 7792 0.7 0.876166
Target:  5'- gCCCCCGGcuacagggGCCAUGuugggccgccACGCGCGgcUGGu -3'
miRNA:   3'- -GGGGGCU--------UGGUACu---------UGCGCGUgaACC- -5'
5590 3' -53.5 NC_001806.1 + 340 0.7 0.881154
Target:  5'- gCCgCCCGGACCGccgcccgccuuuuuUGcGCGCGCGCgcgcccgcgGGg -3'
miRNA:   3'- -GG-GGGCUUGGU--------------ACuUGCGCGUGaa-------CC- -5'
5590 3' -53.5 NC_001806.1 + 129487 0.72 0.775862
Target:  5'- gUCCUCGGaucaucGCCAUGGacgcaaccgccaACGCGCAgUUGGu -3'
miRNA:   3'- -GGGGGCU------UGGUACU------------UGCGCGUgAACC- -5'
5590 3' -53.5 NC_001806.1 + 78328 0.72 0.75695
Target:  5'- gUCCCCGAGCUggGAaccgagcgcgGCGCcGCGCUgGGa -3'
miRNA:   3'- -GGGGGCUUGGuaCU----------UGCG-CGUGAaCC- -5'
5590 3' -53.5 NC_001806.1 + 102436 0.73 0.717873
Target:  5'- gCCCCCGccGGCCGcGAACuGCGU-CUUGGg -3'
miRNA:   3'- -GGGGGC--UUGGUaCUUG-CGCGuGAACC- -5'
5590 3' -53.5 NC_001806.1 + 40827 0.77 0.496301
Target:  5'- aCCCCCcgcaucguuagaGAACCGUGGACGaCGUACggGGc -3'
miRNA:   3'- -GGGGG------------CUUGGUACUUGC-GCGUGaaCC- -5'
5590 3' -53.5 NC_001806.1 + 74696 0.77 0.5265
Target:  5'- gCCCCCGAugCGcgugcccguuugcggGAGCGCGCGCgcucccUGGa -3'
miRNA:   3'- -GGGGGCUugGUa--------------CUUGCGCGUGa-----ACC- -5'
5590 3' -53.5 NC_001806.1 + 56870 0.77 0.535398
Target:  5'- gCCCaCCGAuccACCA-GAGCGCGCGCUg-- -3'
miRNA:   3'- -GGG-GGCU---UGGUaCUUGCGCGUGAacc -5'
5590 3' -53.5 NC_001806.1 + 23874 0.75 0.595849
Target:  5'- aUCCCCGAccCCGaGGACGUGCGCgUGGu -3'
miRNA:   3'- -GGGGGCUu-GGUaCUUGCGCGUGaACC- -5'
5590 3' -53.5 NC_001806.1 + 89040 0.75 0.595849
Target:  5'- cCCCCCGcaguacACCuUGGGgGCGCGCUUGa -3'
miRNA:   3'- -GGGGGCu-----UGGuACUUgCGCGUGAACc -5'
5590 3' -53.5 NC_001806.1 + 121400 0.74 0.647005
Target:  5'- cCCCCCgGAGCCggGcGCGUGCugcgcCUUGGg -3'
miRNA:   3'- -GGGGG-CUUGGuaCuUGCGCGu----GAACC- -5'
5590 3' -53.5 NC_001806.1 + 41937 0.74 0.687761
Target:  5'- cUCCCCGAuauUCAguUGGGCGCGCACgUGa -3'
miRNA:   3'- -GGGGGCUu--GGU--ACUUGCGCGUGaACc -5'
5590 3' -53.5 NC_001806.1 + 41846 0.74 0.69685
Target:  5'- gCCCCGGGCgCGUacgugcGAGCGCGCAgguaggcCUUGGc -3'
miRNA:   3'- gGGGGCUUG-GUA------CUUGCGCGU-------GAACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.