miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5590 3' -53.5 NC_001806.1 + 340 0.7 0.881154
Target:  5'- gCCgCCCGGACCGccgcccgccuuuuuUGcGCGCGCGCgcgcccgcgGGg -3'
miRNA:   3'- -GG-GGGCUUGGU--------------ACuUGCGCGUGaa-------CC- -5'
5590 3' -53.5 NC_001806.1 + 1459 0.69 0.890128
Target:  5'- gCCCCCGGGCCGUcGucgucgccGCGCaGCACcagcgGGg -3'
miRNA:   3'- -GGGGGCUUGGUA-Cu-------UGCG-CGUGaa---CC- -5'
5590 3' -53.5 NC_001806.1 + 1556 0.67 0.954252
Target:  5'- gCCaCCGGGCCGggccGGCGCGCACc--- -3'
miRNA:   3'- gGG-GGCUUGGUac--UUGCGCGUGaacc -5'
5590 3' -53.5 NC_001806.1 + 1900 0.66 0.978811
Target:  5'- aCCCCCGGGCCGaacACGCgGCcCgaGGc -3'
miRNA:   3'- -GGGGGCUUGGUacuUGCG-CGuGaaCC- -5'
5590 3' -53.5 NC_001806.1 + 2830 0.66 0.971143
Target:  5'- gCCCCgGGGgCGUGGaggggggcGCGgGCGCggGGa -3'
miRNA:   3'- -GGGGgCUUgGUACU--------UGCgCGUGaaCC- -5'
5590 3' -53.5 NC_001806.1 + 3152 0.7 0.883259
Target:  5'- gCCCCGGcgACCAggcucacGGCGCGCACggcGGc -3'
miRNA:   3'- gGGGGCU--UGGUac-----UUGCGCGUGaa-CC- -5'
5590 3' -53.5 NC_001806.1 + 5629 0.66 0.978121
Target:  5'- aCCCCCGGccccgcccauccgcGCCAUcugccaugggcgGGGCGCGaggGCgggUGGg -3'
miRNA:   3'- -GGGGGCU--------------UGGUA------------CUUGCGCg--UGa--ACC- -5'
5590 3' -53.5 NC_001806.1 + 7792 0.7 0.876166
Target:  5'- gCCCCCGGcuacagggGCCAUGuugggccgccACGCGCGgcUGGu -3'
miRNA:   3'- -GGGGGCU--------UGGUACu---------UGCGCGUgaACC- -5'
5590 3' -53.5 NC_001806.1 + 10683 0.66 0.971143
Target:  5'- aCCCCCGGucgcagaugggGCCggGGGgGCGUACg--- -3'
miRNA:   3'- -GGGGGCU-----------UGGuaCUUgCGCGUGaacc -5'
5590 3' -53.5 NC_001806.1 + 19056 0.67 0.96166
Target:  5'- gCCUCUGGGCCuggcgcaccGAGCGCcguagcauuGCAUUUGGg -3'
miRNA:   3'- -GGGGGCUUGGua-------CUUGCG---------CGUGAACC- -5'
5590 3' -53.5 NC_001806.1 + 20595 0.69 0.903182
Target:  5'- gCCCCGc-CCAUggcaGAugGCGCGgaUGGg -3'
miRNA:   3'- gGGGGCuuGGUA----CUugCGCGUgaACC- -5'
5590 3' -53.5 NC_001806.1 + 21173 0.68 0.926467
Target:  5'- aCCCCGAGCCcaGAcCGCGacgaGCggGGg -3'
miRNA:   3'- gGGGGCUUGGuaCUuGCGCg---UGaaCC- -5'
5590 3' -53.5 NC_001806.1 + 22003 0.67 0.950208
Target:  5'- aCCUCCGGcGCCuucuACGCGCGCUa-- -3'
miRNA:   3'- -GGGGGCU-UGGuacuUGCGCGUGAacc -5'
5590 3' -53.5 NC_001806.1 + 22071 0.69 0.89677
Target:  5'- gCCCCCGccCCcgGGGCGgGUGCUguacggcggccUGGg -3'
miRNA:   3'- -GGGGGCuuGGuaCUUGCgCGUGA-----------ACC- -5'
5590 3' -53.5 NC_001806.1 + 22180 0.67 0.950208
Target:  5'- gCCCCGGcgGCCGUGuGgGCGCcCgagcUGGg -3'
miRNA:   3'- gGGGGCU--UGGUACuUgCGCGuGa---ACC- -5'
5590 3' -53.5 NC_001806.1 + 22536 0.66 0.978811
Target:  5'- gCCCCUGuuggcGCgCGaGAACGCgGCGCUgacgGGg -3'
miRNA:   3'- -GGGGGCu----UG-GUaCUUGCG-CGUGAa---CC- -5'
5590 3' -53.5 NC_001806.1 + 23874 0.75 0.595849
Target:  5'- aUCCCCGAccCCGaGGACGUGCGCgUGGu -3'
miRNA:   3'- -GGGGGCUu-GGUaCUUGCGCGUGaACC- -5'
5590 3' -53.5 NC_001806.1 + 25505 0.69 0.890128
Target:  5'- cCCCCCGAgggaGCgCG-GGACGCGC-CggGGa -3'
miRNA:   3'- -GGGGGCU----UG-GUaCUUGCGCGuGaaCC- -5'
5590 3' -53.5 NC_001806.1 + 25868 0.68 0.931691
Target:  5'- -gCCCGGGCCccccgcGGGCGCGCGCg--- -3'
miRNA:   3'- ggGGGCUUGGua----CUUGCGCGUGaacc -5'
5590 3' -53.5 NC_001806.1 + 25916 0.66 0.978811
Target:  5'- -gUCCGGGCggCGUGcGCGCGCGCggcgggcgUGGg -3'
miRNA:   3'- ggGGGCUUG--GUACuUGCGCGUGa-------ACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.