miRNA display CGI


Results 41 - 60 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5590 3' -53.5 NC_001806.1 + 96355 0.67 0.96166
Target:  5'- gCCCCCGuagucccGCCAUGcgccagGGCGCccccGCGCggGGg -3'
miRNA:   3'- -GGGGGCu------UGGUAC------UUGCG----CGUGaaCC- -5'
5590 3' -53.5 NC_001806.1 + 69122 0.67 0.96166
Target:  5'- gCCCCCGGggacGCUA--AugGCGCGCgugcGGa -3'
miRNA:   3'- -GGGGGCU----UGGUacUugCGCGUGaa--CC- -5'
5590 3' -53.5 NC_001806.1 + 19056 0.67 0.96166
Target:  5'- gCCUCUGGGCCuggcgcaccGAGCGCcguagcauuGCAUUUGGg -3'
miRNA:   3'- -GGGGGCUUGGua-------CUUGCG---------CGUGAACC- -5'
5590 3' -53.5 NC_001806.1 + 121471 0.67 0.96166
Target:  5'- aCUgCUGGGCCAUGGACaGCG-ACcUGGg -3'
miRNA:   3'- -GGgGGCUUGGUACUUG-CGCgUGaACC- -5'
5590 3' -53.5 NC_001806.1 + 112896 0.67 0.958068
Target:  5'- gCCCCCGGccACCcgGAucccCGCGC-CUUc- -3'
miRNA:   3'- -GGGGGCU--UGGuaCUu---GCGCGuGAAcc -5'
5590 3' -53.5 NC_001806.1 + 135223 0.67 0.958068
Target:  5'- uCCCCCaggaugacaucgGAGCCcgugAUGGGCGCGC-CUacccgGGg -3'
miRNA:   3'- -GGGGG------------CUUGG----UACUUGCGCGuGAa----CC- -5'
5590 3' -53.5 NC_001806.1 + 46367 0.67 0.958068
Target:  5'- cCCCCCaAACCccG-ACGCGC-CaUGGa -3'
miRNA:   3'- -GGGGGcUUGGuaCuUGCGCGuGaACC- -5'
5590 3' -53.5 NC_001806.1 + 43391 0.67 0.958068
Target:  5'- -aCCCGAcGCCucGUGAAggccCGCGC-CUUGGc -3'
miRNA:   3'- ggGGGCU-UGG--UACUU----GCGCGuGAACC- -5'
5590 3' -53.5 NC_001806.1 + 130783 0.67 0.955806
Target:  5'- aCCCCCGucugggagcuGuugugccugugcagcACCAUGGcCGCGCGCcugcaUUGGg -3'
miRNA:   3'- -GGGGGC----------U---------------UGGUACUuGCGCGUG-----AACC- -5'
5590 3' -53.5 NC_001806.1 + 111995 0.67 0.954252
Target:  5'- aCCgCCGGGCCcUGAACGcCGCcuucaGCcUGGc -3'
miRNA:   3'- -GGgGGCUUGGuACUUGC-GCG-----UGaACC- -5'
5590 3' -53.5 NC_001806.1 + 1556 0.67 0.954252
Target:  5'- gCCaCCGGGCCGggccGGCGCGCACc--- -3'
miRNA:   3'- gGG-GGCUUGGUac--UUGCGCGUGaacc -5'
5590 3' -53.5 NC_001806.1 + 35101 0.67 0.951854
Target:  5'- aCCCCCGGgguuauaaaaggcgcGucCCGUGGACGCGgcccuCGgUUGGg -3'
miRNA:   3'- -GGGGGCU---------------U--GGUACUUGCGC-----GUgAACC- -5'
5590 3' -53.5 NC_001806.1 + 22180 0.67 0.950208
Target:  5'- gCCCCGGcgGCCGUGuGgGCGCcCgagcUGGg -3'
miRNA:   3'- gGGGGCU--UGGUACuUgCGCGuGa---ACC- -5'
5590 3' -53.5 NC_001806.1 + 65464 0.67 0.950208
Target:  5'- gCCCCCGggUCcUGGGggcgccCGCGCACc--- -3'
miRNA:   3'- -GGGGGCuuGGuACUU------GCGCGUGaacc -5'
5590 3' -53.5 NC_001806.1 + 22003 0.67 0.950208
Target:  5'- aCCUCCGGcGCCuucuACGCGCGCUa-- -3'
miRNA:   3'- -GGGGGCU-UGGuacuUGCGCGUGAacc -5'
5590 3' -53.5 NC_001806.1 + 32990 0.68 0.945933
Target:  5'- gCCCCGGGCCG-GGcCGC-CACggGGg -3'
miRNA:   3'- gGGGGCUUGGUaCUuGCGcGUGaaCC- -5'
5590 3' -53.5 NC_001806.1 + 71106 0.68 0.945933
Target:  5'- cCCCCUGGGCCAgacGAcCGCGguUccGGa -3'
miRNA:   3'- -GGGGGCUUGGUa--CUuGCGCguGaaCC- -5'
5590 3' -53.5 NC_001806.1 + 117890 0.68 0.936676
Target:  5'- --gCCGAGcCCGUGAGCGCGCGg---- -3'
miRNA:   3'- gggGGCUU-GGUACUUGCGCGUgaacc -5'
5590 3' -53.5 NC_001806.1 + 110108 0.68 0.936676
Target:  5'- gCCCCCu-ACgGUGGAUGUGgGCgUGGg -3'
miRNA:   3'- -GGGGGcuUGgUACUUGCGCgUGaACC- -5'
5590 3' -53.5 NC_001806.1 + 30286 0.68 0.933714
Target:  5'- gCCCCCGGggcggaGCCGgccgcccgccccgcGGACGCGCGCcgUGu -3'
miRNA:   3'- -GGGGGCU------UGGUa-------------CUUGCGCGUGa-ACc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.