miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5590 5' -60.2 NC_001806.1 + 56609 0.68 0.630625
Target:  5'- -cCCAGACGuUUUCgGGCCGCGcGaCCCu -3'
miRNA:   3'- caGGUCUGCuAGAG-CCGGUGC-C-GGGc -5'
5590 5' -60.2 NC_001806.1 + 56638 0.74 0.329128
Target:  5'- -gCCGGuGCGAccUCaUCGGCCgGCGGCCCGu -3'
miRNA:   3'- caGGUC-UGCU--AG-AGCCGG-UGCCGGGC- -5'
5590 5' -60.2 NC_001806.1 + 58327 0.68 0.610851
Target:  5'- cGUCUuGGCGuuggCGGCCGCcuGGCCCGc -3'
miRNA:   3'- -CAGGuCUGCuagaGCCGGUG--CCGGGC- -5'
5590 5' -60.2 NC_001806.1 + 66800 0.68 0.620734
Target:  5'- -gCCGGGagGAUCaCGGCCGagcggggcCGGCCCGg -3'
miRNA:   3'- caGGUCUg-CUAGaGCCGGU--------GCCGGGC- -5'
5590 5' -60.2 NC_001806.1 + 67777 0.75 0.275239
Target:  5'- cUCCGGugGGUUgugUUGGCCGacUGGCCCGg -3'
miRNA:   3'- cAGGUCugCUAG---AGCCGGU--GCCGGGC- -5'
5590 5' -60.2 NC_001806.1 + 67891 0.69 0.581319
Target:  5'- aUCCGGACaAUCccccgGGCCugGGUCCGc -3'
miRNA:   3'- cAGGUCUGcUAGag---CCGGugCCGGGC- -5'
5590 5' -60.2 NC_001806.1 + 68257 0.68 0.639527
Target:  5'- --gCGGACGAcccggcgUUUCuGGCCACGGCCa- -3'
miRNA:   3'- cagGUCUGCU-------AGAG-CCGGUGCCGGgc -5'
5590 5' -60.2 NC_001806.1 + 70039 0.7 0.501665
Target:  5'- -cCCGGuCGAguucgcccugcgugUgUUGGCCugGGCCCGg -3'
miRNA:   3'- caGGUCuGCU--------------AgAGCCGGugCCGGGC- -5'
5590 5' -60.2 NC_001806.1 + 75240 0.66 0.765715
Target:  5'- cGUCCuGGuCGAcg-CGGUgACGGCCCu -3'
miRNA:   3'- -CAGGuCU-GCUagaGCCGgUGCCGGGc -5'
5590 5' -60.2 NC_001806.1 + 77379 0.69 0.552092
Target:  5'- -gCCAGACGggCgcgggcgcggCGGCCGCG-CCCGc -3'
miRNA:   3'- caGGUCUGCuaGa---------GCCGGUGCcGGGC- -5'
5590 5' -60.2 NC_001806.1 + 78213 0.68 0.650402
Target:  5'- -gCCAG-CGuUUUCGGCCGgaGGCCCu -3'
miRNA:   3'- caGGUCuGCuAGAGCCGGUg-CCGGGc -5'
5590 5' -60.2 NC_001806.1 + 79520 0.66 0.756519
Target:  5'- -aCCGGGCG-UCcCGGCCgaaagcacGCGGCCgGc -3'
miRNA:   3'- caGGUCUGCuAGaGCCGG--------UGCCGGgC- -5'
5590 5' -60.2 NC_001806.1 + 87718 0.72 0.39859
Target:  5'- uGUCCuucaGGACGGcUUCGGCCACGGCg-- -3'
miRNA:   3'- -CAGG----UCUGCUaGAGCCGGUGCCGggc -5'
5590 5' -60.2 NC_001806.1 + 89517 0.73 0.348995
Target:  5'- aUCCGGGCGGcgagCUgcugcgcggcgcccCGGCCgGCGGCCCGg -3'
miRNA:   3'- cAGGUCUGCUa---GA--------------GCCGG-UGCCGGGC- -5'
5590 5' -60.2 NC_001806.1 + 91166 0.7 0.532854
Target:  5'- -gCCAGGaca---CGGCCGCGGCCCGc -3'
miRNA:   3'- caGGUCUgcuagaGCCGGUGCCGGGC- -5'
5590 5' -60.2 NC_001806.1 + 91894 0.7 0.523324
Target:  5'- -aCCAGGCGGUCcccaCGGCCaugggGCGGCUgGa -3'
miRNA:   3'- caGGUCUGCUAGa---GCCGG-----UGCCGGgC- -5'
5590 5' -60.2 NC_001806.1 + 98115 0.66 0.747219
Target:  5'- cGUCCAaaacucGAUGcgCaUCaGCuCGCGGCCCGg -3'
miRNA:   3'- -CAGGU------CUGCuaG-AGcCG-GUGCCGGGC- -5'
5590 5' -60.2 NC_001806.1 + 100125 0.75 0.275239
Target:  5'- -gCCuGGCGGUCcgCGGCUAUGGCCCc -3'
miRNA:   3'- caGGuCUGCUAGa-GCCGGUGCCGGGc -5'
5590 5' -60.2 NC_001806.1 + 100629 0.67 0.656327
Target:  5'- uGUCCGG-CGAUCcCGGCCugccgccgccgcuCGGCCa- -3'
miRNA:   3'- -CAGGUCuGCUAGaGCCGGu------------GCCGGgc -5'
5590 5' -60.2 NC_001806.1 + 100757 0.67 0.679947
Target:  5'- -cCCGGacagcGCGAgCUCGGCCucgGCGGCCa- -3'
miRNA:   3'- caGGUC-----UGCUaGAGCCGG---UGCCGGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.